Variant report
| Variant | rs72957625 |
|---|---|
| Chromosome Location | chr2:99510335-99510336 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:99509338..99511041-chr2:99519600..99521247,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs56923186 | 1.00[AMR][1000 genomes] |
| rs58738020 | 1.00[AMR][1000 genomes] |
| rs58821307 | 1.00[AMR][1000 genomes] |
| rs59365702 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs60523550 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs60725966 | 1.00[AMR][1000 genomes] |
| rs60745907 | 1.00[AMR][1000 genomes] |
| rs61503115 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72956638 | 1.00[AMR][1000 genomes] |
| rs72956659 | 1.00[AMR][1000 genomes] |
| rs72956663 | 1.00[AMR][1000 genomes] |
| rs72957633 | 1.00[AMR][1000 genomes] |
| rs72957643 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72957654 | 1.00[AMR][1000 genomes] |
| rs72957656 | 1.00[AMR][1000 genomes] |
| rs72957660 | 1.00[AMR][1000 genomes] |
| rs72957672 | 1.00[AMR][1000 genomes] |
| rs72958630 | 1.00[AMR][1000 genomes] |
| rs72958634 | 1.00[AMR][1000 genomes] |
| rs72958636 | 1.00[AMR][1000 genomes] |
| rs72958646 | 1.00[AMR][1000 genomes] |
| rs72958649 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72958653 | 1.00[AMR][1000 genomes] |
| rs72958659 | 1.00[AMR][1000 genomes] |
| rs72958661 | 1.00[AMR][1000 genomes] |
| rs72958666 | 1.00[AMR][1000 genomes] |
| rs72960709 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73965241 | 1.00[AMR][1000 genomes] |
| rs73965242 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1011278 | chr2:99280928-99638376 | Weak transcription Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| 2 | nsv535835 | chr2:99280928-99638376 | Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| 3 | nsv582518 | chr2:99498774-99546355 | Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:99500000-99517000 | Weak transcription | Gastric | stomach |
| 2 | chr2:99509400-99511200 | Enhancers | iPS DF 19.11 Cell Line | embryonic stem cell |
