Variant report

Variant	rs72958634
Chromosome Location	chr2:99394179-99394180
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs56923186	1.00[AMR][1000 genomes]
rs58738020	1.00[AMR][1000 genomes]
rs58821307	1.00[AMR][1000 genomes]
rs59365702	1.00[AMR][1000 genomes]
rs60523550	1.00[AMR][1000 genomes]
rs60725966	1.00[AMR][1000 genomes]
rs60745907	1.00[AMR][1000 genomes]
rs61503115	1.00[AMR][1000 genomes]
rs72956638	1.00[AMR][1000 genomes]
rs72956659	1.00[AMR][1000 genomes]
rs72956663	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72957625	1.00[AMR][1000 genomes]
rs72957633	1.00[AMR][1000 genomes]
rs72957643	1.00[AMR][1000 genomes]
rs72957654	1.00[AMR][1000 genomes]
rs72957656	1.00[AMR][1000 genomes]
rs72957660	1.00[AMR][1000 genomes]
rs72957672	1.00[AMR][1000 genomes]
rs72958630	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72958636	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72958646	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72958649	1.00[AMR][1000 genomes]
rs72958653	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72958659	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72958661	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72958666	1.00[AMR][1000 genomes]
rs72960709	1.00[AMR][1000 genomes]
rs73965241	1.00[AMR][1000 genomes]
rs73965242	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011278	chr2:99280928-99638376	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv535835	chr2:99280928-99638376	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:99385800-99410400	Weak transcription	Right Atrium	heart
2	chr2:99391000-99395400	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr2:99391600-99406600	Weak transcription	Thymus	Thymus
4	chr2:99392800-99396200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr2:99393000-99394400	Weak transcription	HepG2	liver
6	chr2:99393800-99394400	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr2:99394000-99394200	Enhancers	Sigmoid Colon	Sigmoid Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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