Variant report

Variant	rs72958649
Chromosome Location	chr2:99429019-99429020
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs56923186	1.00[AMR][1000 genomes]
rs58738020	1.00[AMR][1000 genomes]
rs58821307	1.00[AMR][1000 genomes]
rs59365702	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60523550	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60725966	1.00[AMR][1000 genomes]
rs60745907	1.00[AMR][1000 genomes]
rs61503115	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs67008211	0.81[AFR][1000 genomes]
rs72956638	1.00[AMR][1000 genomes]
rs72956659	1.00[AMR][1000 genomes]
rs72956663	1.00[AMR][1000 genomes]
rs72957625	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72957633	1.00[AMR][1000 genomes]
rs72957643	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72957654	1.00[AMR][1000 genomes]
rs72957656	1.00[AMR][1000 genomes]
rs72957660	1.00[AMR][1000 genomes]
rs72957672	1.00[AMR][1000 genomes]
rs72958630	1.00[AMR][1000 genomes]
rs72958634	1.00[AMR][1000 genomes]
rs72958636	1.00[AMR][1000 genomes]
rs72958646	1.00[AMR][1000 genomes]
rs72958653	1.00[AMR][1000 genomes]
rs72958659	1.00[AMR][1000 genomes]
rs72958661	1.00[AMR][1000 genomes]
rs72958666	1.00[AMR][1000 genomes]
rs72960709	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73965241	1.00[AMR][1000 genomes]
rs73965242	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011278	chr2:99280928-99638376	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv535835	chr2:99280928-99638376	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:99418000-99442200	Weak transcription	Stomach Mucosa	stomach
2	chr2:99423000-99432200	Weak transcription	Right Atrium	heart
3	chr2:99423400-99439200	Weak transcription	Duodenum Mucosa	Duodenum
4	chr2:99423600-99439200	Weak transcription	Brain Angular Gyrus	brain
5	chr2:99423800-99434200	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr2:99424000-99432000	Weak transcription	Right Ventricle	heart
7	chr2:99424000-99435600	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr2:99424000-99438400	Weak transcription	Pancreas	Pancrea
9	chr2:99424800-99434800	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr2:99426800-99432000	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr2:99426800-99432200	Weak transcription	Esophagus	oesophagus
12	chr2:99426800-99439200	Weak transcription	Gastric	stomach
13	chr2:99427200-99439000	Weak transcription	Aorta	Aorta
14	chr2:99427400-99431800	Weak transcription	Fetal Intestine Small	intestine
15	chr2:99427400-99442000	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr2:99427600-99434000	Weak transcription	Lung	lung
17	chr2:99427600-99434800	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr2:99427600-99437200	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr2:99427600-99438000	Weak transcription	Fetal Intestine Large	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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