Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1509714	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2010140	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72996779	1.00[EUR][1000 genomes]
rs72998751	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72998759	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72998765	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72998771	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72998773	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72998780	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs72998783	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs72998789	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs73000660	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs73000662	1.00[AFR][1000 genomes]
rs73000680	1.00[AFR][1000 genomes]
rs73000682	1.00[AFR][1000 genomes]
rs73000688	1.00[AFR][1000 genomes]
rs73000691	1.00[AFR][1000 genomes]
rs73000695	1.00[AFR][1000 genomes]
rs73002606	1.00[AFR][1000 genomes]
rs73002610	1.00[AFR][1000 genomes]
rs73002677	1.00[AFR][1000 genomes]
rs73002679	1.00[AFR][1000 genomes]
rs73002681	1.00[AFR][1000 genomes]
rs73002683	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040650	chr11:108859584-109174553	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv898390	chr11:108893765-109003536	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv1815918	chr11:108900487-108948487	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108915600-108922000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:108917200-108919400	Enhancers	Osteobl	bone
3	chr11:108917400-108919800	Enhancers	Muscle Satellite Cultured Cells	--
4	chr11:108917800-108919800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr11:108918600-108919000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr11:108918600-108919400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

Quick Search: