Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1509714	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2010140	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72996777	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72996779	1.00[EUR][1000 genomes]
rs72998751	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72998759	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72998765	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72998771	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72998780	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs72998783	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs72998789	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs73000660	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs73000662	1.00[AFR][1000 genomes]
rs73000680	1.00[AFR][1000 genomes]
rs73000682	1.00[AFR][1000 genomes]
rs73000688	1.00[AFR][1000 genomes]
rs73000691	1.00[AFR][1000 genomes]
rs73000695	1.00[AFR][1000 genomes]
rs73002606	1.00[AFR][1000 genomes]
rs73002610	1.00[AFR][1000 genomes]
rs73002677	1.00[AFR][1000 genomes]
rs73002679	1.00[AFR][1000 genomes]
rs73002681	1.00[AFR][1000 genomes]
rs73002683	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040650	chr11:108859584-109174553	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv898390	chr11:108893765-109003536	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv1815918	chr11:108900487-108948487	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv481	chr11:108921271-108946545	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108937000-108940400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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