Variant report

Variant	rs73000662
Chromosome Location	chr11:108959955-108959956
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs2010140	1.00[AFR][1000 genomes]
rs72996777	1.00[AFR][1000 genomes]
rs72998751	1.00[AFR][1000 genomes]
rs72998759	1.00[AFR][1000 genomes]
rs72998765	1.00[AFR][1000 genomes]
rs72998771	1.00[AFR][1000 genomes]
rs72998773	1.00[AFR][1000 genomes]
rs72998780	1.00[AFR][1000 genomes]
rs72998783	1.00[AFR][1000 genomes]
rs72998789	1.00[AFR][1000 genomes]
rs73000660	1.00[AFR][1000 genomes]
rs73000680	1.00[AFR][1000 genomes]
rs73000682	1.00[AFR][1000 genomes]
rs73000688	1.00[AFR][1000 genomes]
rs73000691	1.00[AFR][1000 genomes]
rs73000695	1.00[AFR][1000 genomes]
rs73002606	1.00[AFR][1000 genomes]
rs73002610	1.00[AFR][1000 genomes]
rs73002677	1.00[AFR][1000 genomes]
rs73002679	1.00[AFR][1000 genomes]
rs73002681	1.00[AFR][1000 genomes]
rs73002683	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040650	chr11:108859584-109174553	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv898390	chr11:108893765-109003536	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108959200-108960200	Enhancers	Osteobl	bone
2	chr11:108959400-108960600	Enhancers	Fetal Thymus	thymus
3	chr11:108959600-108960200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr11:108959600-108960400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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