Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs2010140	1.00[AFR][1000 genomes]
rs72996777	1.00[AFR][1000 genomes]
rs72998751	1.00[AFR][1000 genomes]
rs72998759	1.00[AFR][1000 genomes]
rs72998765	1.00[AFR][1000 genomes]
rs72998771	1.00[AFR][1000 genomes]
rs72998773	1.00[AFR][1000 genomes]
rs72998780	1.00[AFR][1000 genomes]
rs72998783	1.00[AFR][1000 genomes]
rs72998789	1.00[AFR][1000 genomes]
rs73000660	1.00[AFR][1000 genomes]
rs73000662	1.00[AFR][1000 genomes]
rs73000680	1.00[AFR][1000 genomes]
rs73000682	1.00[AFR][1000 genomes]
rs73000688	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs73000691	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs73000695	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs73002606	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73002610	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73002677	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73002681	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73002683	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040650	chr11:108859584-109174553	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:109011800-109013200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr11:109012000-109013600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr11:109012000-109021200	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr11:109012000-109021400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr11:109012400-109013200	Enhancers	Cortex derived primary cultured neurospheres	brain

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