Variant report

Variant	rs72997311
Chromosome Location	chr4:175358291-175358292
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs17060612	1.00[EUR][1000 genomes]
rs2247362	1.00[EUR][1000 genomes]
rs2251807	1.00[EUR][1000 genomes]
rs2253170	1.00[EUR][1000 genomes]
rs2253270	1.00[EUR][1000 genomes]
rs2254225	1.00[EUR][1000 genomes]
rs2254350	1.00[EUR][1000 genomes]
rs2255737	1.00[EUR][1000 genomes]
rs2555630	1.00[EUR][1000 genomes]
rs2555631	1.00[EUR][1000 genomes]
rs2555661	1.00[EUR][1000 genomes]
rs2555668	1.00[EUR][1000 genomes]
rs2612657	1.00[EUR][1000 genomes]
rs2612660	1.00[EUR][1000 genomes]
rs2612661	1.00[EUR][1000 genomes]
rs2612678	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2612688	1.00[EUR][1000 genomes]
rs28539757	1.00[EUR][1000 genomes]
rs45509091	1.00[EUR][1000 genomes]
rs45525332	1.00[EUR][1000 genomes]
rs45527531	1.00[EUR][1000 genomes]
rs45557833	1.00[EUR][1000 genomes]
rs45604244	1.00[EUR][1000 genomes]
rs56812046	1.00[EUR][1000 genomes]
rs6825010	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv596234	chr4:175053051-175361437	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv869116	chr4:175231090-175801761	Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:175350000-175358400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:175356000-175370800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr4:175357400-175358600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr4:175358000-175358400	Flanking Active TSS	A549	lung
5	chr4:175358000-175359200	Enhancers	HMEC	breast
6	chr4:175358200-175358800	Weak transcription	Placenta	Placenta
7	chr4:175358200-175359000	Enhancers	Hela-S3	cervix
8	chr4:175358200-175359200	Enhancers	Muscle Satellite Cultured Cells	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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