Variant report

Variant	rs73012191
Chromosome Location	chr3:156916132-156916133
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:156875185..156880246-chr3:156915839..156922107,12	K562	blood:
2	chr3:156875185..156879753-chr3:156915839..156922107,8	K562	blood:
3	chr3:156892067..156894658-chr3:156915891..156917488,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000163660	Chromatin interaction
ENSG00000243176	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs56989560	1.00[AMR][1000 genomes]
rs58032323	0.85[AFR][1000 genomes]
rs58144880	1.00[AMR][1000 genomes]
rs58512321	1.00[AMR][1000 genomes]
rs58974875	1.00[AMR][1000 genomes]
rs59496343	1.00[AMR][1000 genomes]
rs60611115	1.00[AMR][1000 genomes]
rs61553506	1.00[AMR][1000 genomes]
rs6766781	1.00[AMR][1000 genomes]
rs6781503	1.00[AMR][1000 genomes]
rs6798603	1.00[AMR][1000 genomes]
rs73012145	0.85[AFR][1000 genomes]
rs73012159	1.00[AMR][1000 genomes]
rs73012167	1.00[AMR][1000 genomes]
rs73012171	1.00[AMR][1000 genomes]
rs73012173	1.00[AMR][1000 genomes]
rs73012176	1.00[AMR][1000 genomes]
rs73012181	1.00[AMR][1000 genomes]
rs73012183	1.00[AMR][1000 genomes]
rs73012196	1.00[AMR][1000 genomes]
rs73012198	1.00[AMR][1000 genomes]
rs73012200	1.00[AMR][1000 genomes]
rs73014205	1.00[AMR][1000 genomes]
rs73014206	1.00[AMR][1000 genomes]
rs73014210	1.00[AMR][1000 genomes]
rs73014213	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73014214	1.00[AMR][1000 genomes]
rs73014215	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73014216	1.00[AMR][1000 genomes]
rs73014217	1.00[AMR][1000 genomes]
rs73014223	1.00[AMR][1000 genomes]
rs73014226	1.00[AMR][1000 genomes]
rs73014227	1.00[AMR][1000 genomes]
rs73014232	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73014238	1.00[AMR][1000 genomes]
rs73014241	1.00[AMR][1000 genomes]
rs73014249	1.00[AMR][1000 genomes]
rs73014250	1.00[AMR][1000 genomes]
rs73014253	1.00[AMR][1000 genomes]
rs73016226	1.00[AMR][1000 genomes]
rs73016264	1.00[AMR][1000 genomes]
rs73018205	1.00[AMR][1000 genomes]
rs73018206	1.00[AMR][1000 genomes]
rs73018211	1.00[AMR][1000 genomes]
rs73018215	1.00[AMR][1000 genomes]
rs73018231	1.00[AMR][1000 genomes]
rs73020283	1.00[AMR][1000 genomes]
rs73020286	1.00[AMR][1000 genomes]
rs9917781	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829766	chr3:156811536-157020551	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156905000-156922800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr3:156905200-156919200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links