Variant report

Variant	rs73012171
Chromosome Location	chr3:156904602-156904603
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:156900351..156902675-chr3:156903274..156905529,2	MCF-7	breast:
2	chr3:156901238..156905299-chr3:156943501..156945279,3	K562	blood:
3	chr3:156902735..156905380-chr3:156906139..156908036,2	K562	blood:
4	chr3:156895373..156897878-chr3:156901628..156904613,2	K562	blood:
5	chr3:156900974..156902930-chr3:156903103..156904931,2	K562	blood:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs56989560	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58144880	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58512321	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58974875	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59496343	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60611115	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61553506	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6766781	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6781503	1.00[AMR][1000 genomes]
rs6798603	1.00[AMR][1000 genomes]
rs73012142	0.89[AFR][1000 genomes]
rs73012149	0.89[AFR][1000 genomes]
rs73012153	0.89[AFR][1000 genomes]
rs73012159	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73012167	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73012173	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73012176	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73012181	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73012183	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73012191	1.00[AMR][1000 genomes]
rs73012196	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73012198	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73012200	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73014205	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73014206	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73014210	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73014213	1.00[AMR][1000 genomes]
rs73014214	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73014215	1.00[AMR][1000 genomes]
rs73014216	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73014217	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73014223	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73014225	0.89[AFR][1000 genomes]
rs73014226	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73014227	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73014232	1.00[AMR][1000 genomes]
rs73014238	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73014241	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73014249	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73014250	1.00[AMR][1000 genomes]
rs73014253	1.00[AMR][1000 genomes]
rs73016226	1.00[AMR][1000 genomes]
rs73016264	1.00[AMR][1000 genomes]
rs73018205	1.00[AMR][1000 genomes]
rs73018206	1.00[AMR][1000 genomes]
rs73018211	1.00[AMR][1000 genomes]
rs73018215	1.00[AMR][1000 genomes]
rs73018231	1.00[AMR][1000 genomes]
rs73020283	1.00[AMR][1000 genomes]
rs73020286	1.00[AMR][1000 genomes]
rs9917781	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829766	chr3:156811536-157020551	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv520331	chr3:156858300-156915650	Flanking Active TSS Active TSS Genic enhancers Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	139 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156894400-156906400	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr3:156894400-156906600	Weak transcription	Right Ventricle	heart
3	chr3:156894400-156906800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:156894600-156909000	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr3:156900000-156905400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr3:156901200-156905000	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
7	chr3:156901400-156904800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
8	chr3:156901400-156904800	ZNF genes & repeats	Primary B cells from cord blood	blood
9	chr3:156901600-156904800	ZNF genes & repeats	Fetal Intestine Small	intestine
10	chr3:156901600-156904800	Strong transcription	Stomach Smooth Muscle	stomach
11	chr3:156902200-156905000	ZNF genes & repeats	Fetal Stomach	stomach
12	chr3:156902400-156904800	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
13	chr3:156902400-156905000	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
14	chr3:156902400-156905200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr3:156902600-156904800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
16	chr3:156902800-156904800	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
17	chr3:156902800-156904800	ZNF genes & repeats	Fetal Lung	lung
18	chr3:156902800-156905000	ZNF genes & repeats	Primary B cells from peripheral blood	blood
19	chr3:156902800-156905000	ZNF genes & repeats	Liver	Liver
20	chr3:156902800-156905000	Strong transcription	Duodenum Smooth Muscle	Duodenum
21	chr3:156902800-156905200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr3:156902800-156905200	ZNF genes & repeats	Primary T cells from cord blood	blood
23	chr3:156903000-156904800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr3:156903000-156904800	ZNF genes & repeats	Aorta	Aorta
25	chr3:156903000-156905000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
26	chr3:156903000-156905000	ZNF genes & repeats	Lung	lung
27	chr3:156903000-156905000	ZNF genes & repeats	Thymus	Thymus
28	chr3:156903200-156905000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr3:156903200-156905400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
30	chr3:156903400-156905000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr3:156903400-156905000	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
32	chr3:156903400-156905400	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr3:156903400-156905600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr3:156903400-156905800	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr3:156903600-156904800	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
36	chr3:156903600-156905200	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
37	chr3:156903800-156905000	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr3:156903800-156905000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
39	chr3:156903800-156905000	ZNF genes & repeats	Dnd41	blood
40	chr3:156903800-156906200	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
41	chr3:156904000-156904800	ZNF genes & repeats	Fetal Thymus	thymus
42	chr3:156904000-156904800	ZNF genes & repeats	Pancreas	Pancrea
43	chr3:156904000-156904800	ZNF genes & repeats	Spleen	Spleen
44	chr3:156904000-156905000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr3:156904000-156905200	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr3:156904000-156905600	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr3:156904000-156906000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr3:156904200-156905000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr3:156904200-156905200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
50	chr3:156904200-156906200	Weak transcription	Brain Angular Gyrus	brain

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