Variant report

Variant	rs73012181
Chromosome Location	chr3:156913696-156913697
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156892217..156895183-chr3:156912463..156914035,2	K562	blood:

Variant related genes	Relation type
ENSG00000243176	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs56989560	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58144880	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58512321	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58974875	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59496343	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60611115	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61553506	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6766781	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6781503	1.00[AMR][1000 genomes]
rs6798603	1.00[AMR][1000 genomes]
rs73012142	0.89[AFR][1000 genomes]
rs73012149	0.89[AFR][1000 genomes]
rs73012153	0.89[AFR][1000 genomes]
rs73012159	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73012167	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73012171	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73012173	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73012176	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73012183	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73012191	1.00[AMR][1000 genomes]
rs73012196	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73012198	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73012200	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73014205	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73014206	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73014210	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73014213	1.00[AMR][1000 genomes]
rs73014214	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73014215	1.00[AMR][1000 genomes]
rs73014216	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73014217	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73014223	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73014225	0.89[AFR][1000 genomes]
rs73014226	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73014227	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73014232	1.00[AMR][1000 genomes]
rs73014238	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73014241	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73014249	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73014250	1.00[AMR][1000 genomes]
rs73014253	1.00[AMR][1000 genomes]
rs73016226	1.00[AMR][1000 genomes]
rs73016264	1.00[AMR][1000 genomes]
rs73018205	1.00[AMR][1000 genomes]
rs73018206	1.00[AMR][1000 genomes]
rs73018211	1.00[AMR][1000 genomes]
rs73018215	1.00[AMR][1000 genomes]
rs73018231	1.00[AMR][1000 genomes]
rs73020283	1.00[AMR][1000 genomes]
rs73020286	1.00[AMR][1000 genomes]
rs9917781	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829766	chr3:156811536-157020551	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv520331	chr3:156858300-156915650	Flanking Active TSS Active TSS Genic enhancers Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	139 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156905000-156922800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr3:156905200-156919200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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