Variant report

Variant	rs73014225
Chromosome Location	chr3:156951936-156951937
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs56989560	0.89[AFR][1000 genomes]
rs58144880	0.95[AFR][1000 genomes]
rs58512321	1.00[AFR][1000 genomes]
rs58974875	0.95[AFR][1000 genomes]
rs60611115	0.95[AFR][1000 genomes]
rs61553506	0.89[AFR][1000 genomes]
rs6766781	0.89[AFR][1000 genomes]
rs6798603	0.89[AFR][1000 genomes]
rs73012167	0.89[AFR][1000 genomes]
rs73012171	0.89[AFR][1000 genomes]
rs73012173	0.87[AFR][1000 genomes]
rs73012176	0.89[AFR][1000 genomes]
rs73012181	0.89[AFR][1000 genomes]
rs73012196	0.95[AFR][1000 genomes]
rs73012198	0.89[AFR][1000 genomes]
rs73012200	0.89[AFR][1000 genomes]
rs73014205	1.00[AFR][1000 genomes]
rs73014206	1.00[AFR][1000 genomes]
rs73014210	1.00[AFR][1000 genomes]
rs73014214	1.00[AFR][1000 genomes]
rs73014216	1.00[AFR][1000 genomes]
rs73014217	1.00[AFR][1000 genomes]
rs73014223	1.00[AFR][1000 genomes]
rs73014226	1.00[AFR][1000 genomes]
rs73014227	1.00[AFR][1000 genomes]
rs73014238	1.00[AFR][1000 genomes]
rs73014241	1.00[AFR][1000 genomes]
rs73014249	1.00[AFR][1000 genomes]
rs73016226	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829766	chr3:156811536-157020551	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv877687	chr3:156924793-157044184	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156949400-156952400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr3:156949600-156956800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr3:156950000-156955600	Weak transcription	Osteobl	bone
4	chr3:156950400-156952400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr3:156950600-156957000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr3:156951800-156955200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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