Variant report

Variant	rs58512321
Chromosome Location	chr3:156942532-156942533
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156933862..156936263-chr3:156942374..156944793,2	K562	blood:
2	chr3:156941485..156943155-chr3:156948352..156950301,3	K562	blood:

Variant related genes	Relation type
ENSG00000270981	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs56989560	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58144880	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58974875	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59496343	1.00[AMR][1000 genomes]
rs60611115	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61553506	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6766781	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6781503	1.00[AMR][1000 genomes]
rs6798603	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73012159	1.00[AMR][1000 genomes]
rs73012167	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73012171	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73012173	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73012176	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73012181	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73012183	1.00[AMR][1000 genomes]
rs73012191	1.00[AMR][1000 genomes]
rs73012196	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73012198	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73012200	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73014205	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73014206	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73014210	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73014213	1.00[AMR][1000 genomes]
rs73014214	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73014215	1.00[AMR][1000 genomes]
rs73014216	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73014217	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73014223	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73014225	1.00[AFR][1000 genomes]
rs73014226	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73014227	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73014232	1.00[AMR][1000 genomes]
rs73014238	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73014241	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73014249	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73014250	1.00[AMR][1000 genomes]
rs73014253	1.00[AMR][1000 genomes]
rs73016226	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73016264	1.00[AMR][1000 genomes]
rs73018205	1.00[AMR][1000 genomes]
rs73018206	1.00[AMR][1000 genomes]
rs73018211	1.00[AMR][1000 genomes]
rs73018215	1.00[AMR][1000 genomes]
rs73018231	1.00[AMR][1000 genomes]
rs73020283	1.00[AMR][1000 genomes]
rs73020286	1.00[AMR][1000 genomes]
rs9917781	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829766	chr3:156811536-157020551	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv877687	chr3:156924793-157044184	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156938200-156943600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr3:156938200-156948400	Weak transcription	NHDF-Ad	bronchial
3	chr3:156938400-156943800	Weak transcription	Osteobl	bone
4	chr3:156938800-156943800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr3:156939000-156943800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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