Variant report

Variant	rs73014214
Chromosome Location	chr3:156943952-156943953
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RUNX3	chr3:156943948-156944231	GM12878	blood:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:156937140..156939016-chr3:156942989..156946437,3	MCF-7	breast:
2	chr3:156943575..156945121-chr3:156948800..156950615,2	K562	blood:
3	chr3:156933862..156936263-chr3:156942374..156944793,2	K562	blood:
4	chr3:156872209..156874500-chr3:156943435..156945429,2	K562	blood:
5	chr3:156901238..156905299-chr3:156943501..156945279,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000243176	TF binding region
ENSG00000270981	Chromatin interaction
ENSG00000163660	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs56989560	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58144880	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58512321	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58974875	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59496343	1.00[AMR][1000 genomes]
rs60611115	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61553506	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6766781	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6781503	1.00[AMR][1000 genomes]
rs6798603	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73012159	1.00[AMR][1000 genomes]
rs73012167	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73012171	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73012173	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73012176	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73012181	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73012183	1.00[AMR][1000 genomes]
rs73012191	1.00[AMR][1000 genomes]
rs73012196	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73012198	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73012200	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73014205	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73014206	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73014210	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73014213	1.00[AMR][1000 genomes]
rs73014215	1.00[AMR][1000 genomes]
rs73014216	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73014217	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73014223	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73014225	1.00[AFR][1000 genomes]
rs73014226	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73014227	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73014232	1.00[AMR][1000 genomes]
rs73014238	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73014241	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73014249	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73014250	1.00[AMR][1000 genomes]
rs73014253	1.00[AMR][1000 genomes]
rs73016226	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73016264	1.00[AMR][1000 genomes]
rs73018205	1.00[AMR][1000 genomes]
rs73018206	1.00[AMR][1000 genomes]
rs73018211	1.00[AMR][1000 genomes]
rs73018215	1.00[AMR][1000 genomes]
rs73018231	1.00[AMR][1000 genomes]
rs73020283	1.00[AMR][1000 genomes]
rs73020286	1.00[AMR][1000 genomes]
rs9917781	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829766	chr3:156811536-157020551	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv877687	chr3:156924793-157044184	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156938200-156948400	Weak transcription	NHDF-Ad	bronchial
2	chr3:156942600-156944000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr3:156942800-156944600	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr3:156942800-156944600	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr3:156943600-156944600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr3:156943600-156944800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr3:156943600-156946200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr3:156943800-156944400	Enhancers	Muscle Satellite Cultured Cells	--
9	chr3:156943800-156944600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr3:156943800-156944600	Enhancers	Osteobl	bone
11	chr3:156943800-156944800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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