Variant report

Variant	rs73032185
Chromosome Location	chr1:172500666-172500667
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr1:172500531-172503100	K562	blood:	n/a	n/a
2	TEAD4	chr1:172500605-172503401	K562	blood:	n/a	n/a
3	POLR2A	chr1:172500513-172503382	K562	blood:	n/a	n/a
4	POLR2A	chr1:172500590-172503489	GM12891	blood:	n/a	n/a
5	SREBP1	chr1:172500153-172503694	GM12878	blood:	n/a	n/a
6	POLR2A	chr1:172500436-172503590	PBDE	blood:	n/a	n/a
7	SIN3AK20	chr1:172500362-172503546	MCF-7	breast:	n/a	n/a
8	NFYA	chr1:172500657-172502458	Hela-S3	cervix:	n/a	chr1:172502204-172502219 chr1:172501602-172501612 chr1:172501602-172501612 chr1:172501600-172501618 chr1:172502204-172502219
9	GATA1	chr1:172500576-172502919	PBDE	blood:	n/a	chr1:172500762-172500772
10	TBL1XR1	chr1:172500553-172503421	K562	blood:	n/a	n/a
11	POLR2A	chr1:172500568-172502823	K562	blood:	n/a	n/a
12	POLR2A	chr1:172500631-172500823	HepG2	liver:	n/a	n/a
13	HCFC1	chr1:172500408-172504740	Hela-S3	cervix:	n/a	n/a
14	POLR2A	chr1:172500375-172503329	MCF10A-Er-Src	breast:	n/a	n/a
15	MYC	chr1:172500533-172504004	K562	blood:	n/a	n/a
16	GATA3	chr1:172500280-172501033	SK-N-SH	brain:	n/a	chr1:172500762-172500772
17	RFX5	chr1:172500645-172503284	Hela-S3	cervix:	n/a	chr1:172501603-172501612
18	RCOR1	chr1:172500527-172503380	K562	blood:	n/a	n/a
19	GATA3	chr1:172500462-172500852	MCF-7	breast:	n/a	chr1:172500762-172500772
20	MXI1	chr1:172500615-172503731	IMR90	lung:	n/a	n/a
21	ARID3A	chr1:172500629-172502425	K562	blood:	n/a	n/a
22	IRF1	chr1:172500618-172502734	K562	blood:	n/a	chr1:172502697-172502711 chr1:172502008-172502022 chr1:172502101-172502115 chr1:172501580-172501591 chr1:172501579-172501596 chr1:172502208-172502217 chr1:172501602-172501611 chr1:172501579-172501591 chr1:172501576-172501590
23	POLR2A	chr1:172500514-172503184	K562	blood:	n/a	n/a
24	GATA3	chr1:172500370-172500972	SK-N-SH	brain:	n/a	chr1:172500762-172500772
25	IRF1	chr1:172500475-172503215	K562	blood:	n/a	chr1:172502697-172502711 chr1:172502008-172502022 chr1:172502101-172502115 chr1:172502906-172502915 chr1:172501580-172501591 chr1:172501579-172501596 chr1:172502208-172502217 chr1:172501602-172501611 chr1:172501579-172501591 chr1:172501576-172501590

No.	Distal block	Cell Line	Cell type
1	chr1:172411084..172422561-chr1:172496524..172504623,44	MCF-7	breast:
2	chr1:172486127..172488704-chr1:172497575..172501072,3	MCF-7	breast:
3	chr1:172396812..172398792-chr1:172499531..172501174,2	MCF-7	breast:
4	chr1:172499065..172502708-chr1:172575408..172578949,3	K562	blood:
5	chr1:172440495..172444630-chr1:172497465..172500697,4	MCF-7	breast:
6	chr1:172398685..172401320-chr1:172498374..172501094,2	MCF-7	breast:
7	chr1:172412087..172424934-chr1:172497120..172505334,59	MCF-7	breast:
8	chr1:172480445..172482424-chr1:172499752..172501373,2	K562	blood:
9	chr1:172410326..172414934-chr1:172499314..172504781,7	K562	blood:

Variant related genes	Relation type
SUCO	TF binding region
ENSG00000094975	Chromatin interaction
ENSG00000135845	Chromatin interaction
ENSG00000180999	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs56214947	1.00[AMR][1000 genomes]
rs57241865	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60823005	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73032191	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73034014	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73034021	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73034022	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73034024	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73034027	1.00[AMR][1000 genomes]
rs73034036	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73034039	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73034049	1.00[AMR][1000 genomes]
rs73034055	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73034058	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73034068	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73034079	1.00[EUR][1000 genomes]
rs73034085	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73034089	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73034091	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73034095	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73034097	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73034101	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73036104	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73036106	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73036109	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73036110	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73036115	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73036126	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74124208	1.00[EUR][1000 genomes]

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172498200-172501200	Enhancers	Placenta Amnion	Placenta Amnion
2	chr1:172499200-172500800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr1:172499800-172501200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr1:172500200-172500800	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr1:172500400-172500800	Enhancers	Primary hematopoietic stem cells	blood
6	chr1:172500400-172500800	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr1:172500400-172500800	Enhancers	Liver	Liver
8	chr1:172500400-172500800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr1:172500400-172500800	Enhancers	Fetal Heart	heart
10	chr1:172500400-172500800	Enhancers	Fetal Intestine Large	intestine
11	chr1:172500400-172500800	Enhancers	Stomach Smooth Muscle	stomach
12	chr1:172500400-172500800	Enhancers	HUVEC	blood vessel
13	chr1:172500400-172501000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr1:172500400-172501000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr1:172500400-172501000	Enhancers	Fetal Intestine Small	intestine
16	chr1:172500400-172501000	Flanking Active TSS	K562	blood
17	chr1:172500400-172501000	Flanking Active TSS	NHLF	lung
18	chr1:172500400-172501400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr1:172500400-172502400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr1:172500400-172504600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr1:172500600-172500800	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr1:172500600-172500800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
23	chr1:172500600-172500800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
24	chr1:172500600-172500800	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr1:172500600-172500800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr1:172500600-172500800	Enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr1:172500600-172500800	Enhancers	Primary T cells from cord blood	blood
28	chr1:172500600-172500800	Enhancers	Primary T helper cells PMA-I stimulated	--
29	chr1:172500600-172500800	Active TSS	Primary T helper cells fromperipheralblood	blood
30	chr1:172500600-172500800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
31	chr1:172500600-172500800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
32	chr1:172500600-172500800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr1:172500600-172500800	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr1:172500600-172500800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
35	chr1:172500600-172500800	Enhancers	Adipose Nuclei	Adipose
36	chr1:172500600-172500800	Enhancers	Aorta	Aorta
37	chr1:172500600-172500800	Enhancers	Brain Angular Gyrus	brain
38	chr1:172500600-172500800	Enhancers	Brain Anterior Caudate	brain
39	chr1:172500600-172500800	Enhancers	Brain Cingulate Gyrus	brain
40	chr1:172500600-172500800	Enhancers	Brain Hippocampus Middle	brain
41	chr1:172500600-172500800	Enhancers	Brain Inferior Temporal Lobe	brain
42	chr1:172500600-172500800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
43	chr1:172500600-172500800	Enhancers	Colon Smooth Muscle	Colon
44	chr1:172500600-172500800	Enhancers	Duodenum Mucosa	Duodenum
45	chr1:172500600-172500800	Enhancers	Fetal Lung	lung
46	chr1:172500600-172500800	Flanking Active TSS	Fetal Muscle Leg	muscle
47	chr1:172500600-172500800	Enhancers	Rectal Smooth Muscle	rectum
48	chr1:172500600-172500800	Enhancers	Skeletal Muscle Male	skeletal muscle
49	chr1:172500600-172500800	Enhancers	Skeletal Muscle Female	skeletal muscle
50	chr1:172500600-172500800	Flanking Bivalent TSS/Enh	Dnd41	blood

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