Variant report

Variant	rs73034891
Chromosome Location	chr1:180714527-180714528
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs57893270	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs58078052	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs58688129	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs58917243	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs59921476	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs60823702	0.85[AMR][1000 genomes]
rs61058506	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6425651	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6425654	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6659262	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6688066	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6688797	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6692456	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6704318	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73034834	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73034843	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73034849	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73034858	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73034861	0.85[AMR][1000 genomes]
rs73034880	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73034895	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73036503	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73036511	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73036513	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73040964	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73040979	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73042709	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73044553	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73044557	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73044560	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73044571	0.85[AFR][1000 genomes]
rs73045791	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73047683	0.85[AMR][1000 genomes]
rs73047693	0.85[AMR][1000 genomes]
rs73049473	0.85[AMR][1000 genomes]
rs73049479	0.85[AMR][1000 genomes]
rs73049494	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73049495	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73049502	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73051223	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73051232	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73051247	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73051258	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7513630	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7523694	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7528848	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7528955	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003359	chr1:180300936-180727561	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	48 gene(s)	inside rSNPs	diseases
2	nsv872578	chr1:180510771-180842344	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:180708400-180722400	Weak transcription	Aorta	Aorta
2	chr1:180710000-180717200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr1:180711400-180721200	Weak transcription	Osteobl	bone
4	chr1:180712600-180715000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
5	chr1:180713000-180814200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr1:180713200-180714800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
7	chr1:180713400-180716200	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr1:180713400-180742200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr1:180713800-180714800	ZNF genes & repeats	Primary B cells from cord blood	blood
10	chr1:180714200-180715000	ZNF genes & repeats	Primary T cells from cord blood	blood
11	chr1:180714400-180714600	Enhancers	Left Ventricle	heart
12	chr1:180714400-180714600	Weak transcription	Psoas Muscle	Psoas
13	chr1:180714400-180715000	Enhancers	Right Ventricle	heart

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