Variant report

Variant	rs73049473
Chromosome Location	chr1:180622464-180622465
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:180617456..180619128-chr1:180621082..180622603,2	K562	blood:
2	chr1:180495342..180496951-chr1:180619499..180622464,2	K562	blood:
3	chr1:180619033..180620740-chr1:180621904..180624430,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ACBD6-5	chr1:180622430-180622641	expReg_chr1_18266_-

Extended variants
information (count: 278 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:274)

rs_ID	r²[population]
rs10399718	0.85[AMR][1000 genomes]
rs10399804	0.85[AMR][1000 genomes]
rs10399869	0.85[AMR][1000 genomes]
rs10914062	0.85[AMR][1000 genomes]
rs10914063	0.85[AMR][1000 genomes]
rs10914064	0.85[AMR][1000 genomes]
rs10914065	0.85[AMR][1000 genomes]
rs10914069	0.85[AMR][1000 genomes]
rs10914070	0.85[AMR][1000 genomes]
rs10914071	0.85[AMR][1000 genomes]
rs10914072	0.85[AMR][1000 genomes]
rs10914073	0.85[AMR][1000 genomes]
rs10914081	0.85[AMR][1000 genomes]
rs10914082	0.85[AMR][1000 genomes]
rs10914085	0.85[AMR][1000 genomes]
rs10914087	0.85[AMR][1000 genomes]
rs10914088	0.85[AMR][1000 genomes]
rs10914090	0.85[AMR][1000 genomes]
rs10914091	0.85[AMR][1000 genomes]
rs10914093	0.85[AMR][1000 genomes]
rs10914098	0.85[AMR][1000 genomes]
rs10914101	0.85[AMR][1000 genomes]
rs10914102	0.85[AMR][1000 genomes]
rs10914103	0.85[AMR][1000 genomes]
rs10914105	0.85[AMR][1000 genomes]
rs10914106	0.85[AMR][1000 genomes]
rs10914119	0.85[AMR][1000 genomes]
rs11484582	0.85[AMR][1000 genomes]
rs11484677	0.85[AMR][1000 genomes]
rs11487433	0.85[AMR][1000 genomes]
rs12058064	0.85[AMR][1000 genomes]
rs12058106	0.85[AMR][1000 genomes]
rs12059242	0.85[AMR][1000 genomes]
rs12059644	0.85[AMR][1000 genomes]
rs12059678	0.85[AMR][1000 genomes]
rs12059686	0.85[AMR][1000 genomes]
rs12060123	0.85[AMR][1000 genomes]
rs12063354	0.85[AMR][1000 genomes]
rs12063893	0.85[AMR][1000 genomes]
rs12065537	0.85[AMR][1000 genomes]
rs12066418	0.85[AMR][1000 genomes]
rs12066422	0.85[AMR][1000 genomes]
rs12067061	0.85[AMR][1000 genomes]
rs12067633	0.85[AMR][1000 genomes]
rs12067934	0.85[AMR][1000 genomes]
rs12068624	0.85[AMR][1000 genomes]
rs12068720	0.85[AMR][1000 genomes]
rs12069405	0.85[AMR][1000 genomes]
rs12069760	0.85[AMR][1000 genomes]
rs12070064	0.85[AMR][1000 genomes]
rs12070161	0.85[AMR][1000 genomes]
rs12070595	0.85[AMR][1000 genomes]
rs12071498	0.85[AMR][1000 genomes]
rs12073086	0.85[AMR][1000 genomes]
rs12073140	0.85[AMR][1000 genomes]
rs12073289	0.85[AMR][1000 genomes]
rs12075235	0.85[AMR][1000 genomes]
rs12075809	0.85[AMR][1000 genomes]
rs12076634	0.85[AMR][1000 genomes]
rs12076809	0.85[AMR][1000 genomes]
rs12076888	0.85[AMR][1000 genomes]
rs12076958	0.85[AMR][1000 genomes]
rs12077610	0.85[AMR][1000 genomes]
rs12078050	0.85[AMR][1000 genomes]
rs12078652	0.85[AMR][1000 genomes]
rs12079208	0.85[AMR][1000 genomes]
rs12079213	0.85[AMR][1000 genomes]
rs12079923	0.85[AMR][1000 genomes]
rs12080210	0.85[AMR][1000 genomes]
rs12080481	0.85[AMR][1000 genomes]
rs12080611	0.85[AMR][1000 genomes]
rs12080816	0.85[AMR][1000 genomes]
rs12080899	0.85[AMR][1000 genomes]
rs12081201	0.85[AMR][1000 genomes]
rs12081764	0.85[AMR][1000 genomes]
rs12081846	0.85[AMR][1000 genomes]
rs12082519	0.85[AMR][1000 genomes]
rs12082726	0.85[AMR][1000 genomes]
rs12084318	0.85[AMR][1000 genomes]
rs12084517	0.85[AMR][1000 genomes]
rs12084841	0.85[AMR][1000 genomes]
rs12086487	0.85[AMR][1000 genomes]
rs12087173	0.85[AMR][1000 genomes]
rs12087411	0.85[AMR][1000 genomes]
rs12087562	0.85[AMR][1000 genomes]
rs12087806	0.85[AMR][1000 genomes]
rs12088431	0.85[AMR][1000 genomes]
rs12088485	0.85[AMR][1000 genomes]
rs12088750	0.85[AMR][1000 genomes]
rs12088908	0.85[AMR][1000 genomes]
rs12089155	0.85[AMR][1000 genomes]
rs12090165	0.85[AMR][1000 genomes]
rs12090251	0.85[AMR][1000 genomes]
rs12090937	0.85[AMR][1000 genomes]
rs12092594	0.85[AMR][1000 genomes]
rs12093445	0.85[AMR][1000 genomes]
rs12093826	0.85[AMR][1000 genomes]
rs12094326	0.85[AMR][1000 genomes]
rs12095684	0.85[AMR][1000 genomes]
rs12097111	0.85[AMR][1000 genomes]
rs12097114	0.85[AMR][1000 genomes]
rs12097831	0.85[AMR][1000 genomes]
rs28396858	0.85[AMR][1000 genomes]
rs28772709	0.85[AMR][1000 genomes]
rs28860229	0.85[AMR][1000 genomes]
rs57032990	0.85[AMR][1000 genomes]
rs57514172	0.85[AMR][1000 genomes]
rs57581991	0.85[AMR][1000 genomes]
rs57893270	1.00[AMR][1000 genomes]
rs58078052	1.00[AMR][1000 genomes]
rs58365677	0.85[AMR][1000 genomes]
rs58414267	0.85[AMR][1000 genomes]
rs58438796	0.85[AMR][1000 genomes]
rs58688129	1.00[AMR][1000 genomes]
rs58826347	0.85[AMR][1000 genomes]
rs58845755	0.85[AMR][1000 genomes]
rs58917243	1.00[AMR][1000 genomes]
rs58925572	0.85[AMR][1000 genomes]
rs58976920	0.85[AMR][1000 genomes]
rs59013965	0.85[AMR][1000 genomes]
rs59071173	0.85[AMR][1000 genomes]
rs59084656	0.85[AMR][1000 genomes]
rs59197802	0.85[AMR][1000 genomes]
rs59451280	0.85[AMR][1000 genomes]
rs59543576	0.85[AMR][1000 genomes]
rs59741364	0.85[AMR][1000 genomes]
rs59921476	1.00[AMR][1000 genomes]
rs59929457	0.85[AMR][1000 genomes]
rs60159602	0.85[AMR][1000 genomes]
rs60280211	0.85[AMR][1000 genomes]
rs60290602	0.85[AMR][1000 genomes]
rs60396352	0.85[AMR][1000 genomes]
rs60653579	0.85[AMR][1000 genomes]
rs60823702	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61038985	0.85[AMR][1000 genomes]
rs61058506	1.00[AMR][1000 genomes]
rs61213326	0.85[AMR][1000 genomes]
rs61530504	0.85[AMR][1000 genomes]
rs61742073	0.85[AMR][1000 genomes]
rs6425649	0.85[AMR][1000 genomes]
rs6425650	0.85[AMR][1000 genomes]
rs6425651	1.00[AMR][1000 genomes]
rs6425653	0.85[AMR][1000 genomes]
rs6425654	1.00[AMR][1000 genomes]
rs6657287	0.85[AMR][1000 genomes]
rs6659262	1.00[AMR][1000 genomes]
rs6667050	0.85[AMR][1000 genomes]
rs6668077	0.85[AMR][1000 genomes]
rs6668578	0.85[AMR][1000 genomes]
rs6671456	0.85[AMR][1000 genomes]
rs6671987	0.85[AMR][1000 genomes]
rs6672886	0.85[AMR][1000 genomes]
rs6672994	0.85[AMR][1000 genomes]
rs6675189	0.85[AMR][1000 genomes]
rs6675596	0.85[AMR][1000 genomes]
rs6679698	0.85[AMR][1000 genomes]
rs6681878	0.85[AMR][1000 genomes]
rs6682446	0.85[AMR][1000 genomes]
rs6682537	0.85[AMR][1000 genomes]
rs6686781	0.85[AMR][1000 genomes]
rs6686881	0.85[AMR][1000 genomes]
rs6687073	0.85[AMR][1000 genomes]
rs6688066	1.00[AMR][1000 genomes]
rs6688797	1.00[AMR][1000 genomes]
rs6692456	1.00[AMR][1000 genomes]
rs6692867	0.85[AMR][1000 genomes]
rs6693045	0.85[AMR][1000 genomes]
rs6693245	0.85[AMR][1000 genomes]
rs6694620	0.85[AMR][1000 genomes]
rs6697358	0.85[AMR][1000 genomes]
rs6698724	0.85[AMR][1000 genomes]
rs6704318	1.00[AMR][1000 genomes]
rs73034723	0.85[AMR][1000 genomes]
rs73034725	0.85[AMR][1000 genomes]
rs73034733	0.85[AMR][1000 genomes]
rs73034735	0.85[AMR][1000 genomes]
rs73034738	0.85[AMR][1000 genomes]
rs73034820	0.85[AMR][1000 genomes]
rs73034824	0.85[AMR][1000 genomes]
rs73034834	1.00[AMR][1000 genomes]
rs73034843	1.00[AMR][1000 genomes]
rs73034844	0.85[AMR][1000 genomes]
rs73034846	0.85[AMR][1000 genomes]
rs73034849	1.00[AMR][1000 genomes]
rs73034850	0.85[AMR][1000 genomes]
rs73034852	0.85[AMR][1000 genomes]
rs73034855	0.85[AMR][1000 genomes]
rs73034858	1.00[AMR][1000 genomes]
rs73034861	1.00[AMR][1000 genomes]
rs73034864	0.85[AMR][1000 genomes]
rs73034870	0.85[AMR][1000 genomes]
rs73034874	0.85[AMR][1000 genomes]
rs73034877	0.85[AMR][1000 genomes]
rs73034880	1.00[AMR][1000 genomes]
rs73034884	0.85[AMR][1000 genomes]
rs73034888	0.85[AMR][1000 genomes]
rs73034891	0.85[AMR][1000 genomes]
rs73034894	0.85[AMR][1000 genomes]
rs73034895	1.00[AMR][1000 genomes]
rs73036503	1.00[AMR][1000 genomes]
rs73036511	1.00[AMR][1000 genomes]
rs73036513	1.00[AMR][1000 genomes]
rs73036516	0.85[AMR][1000 genomes]
rs73036523	0.85[AMR][1000 genomes]
rs73036537	0.85[AMR][1000 genomes]
rs73036574	0.85[AMR][1000 genomes]
rs73036576	0.85[AMR][1000 genomes]
rs73040964	1.00[AMR][1000 genomes]
rs73040975	0.85[AMR][1000 genomes]
rs73040979	1.00[AMR][1000 genomes]
rs73042705	0.85[AMR][1000 genomes]
rs73042707	0.85[AMR][1000 genomes]
rs73042709	1.00[AMR][1000 genomes]
rs73042714	0.85[AMR][1000 genomes]
rs73044538	0.85[AMR][1000 genomes]
rs73044549	0.85[AMR][1000 genomes]
rs73044553	1.00[AMR][1000 genomes]
rs73044557	1.00[AMR][1000 genomes]
rs73044560	1.00[AMR][1000 genomes]
rs73044571	0.83[AMR][1000 genomes]
rs73044573	0.85[AMR][1000 genomes]
rs73047677	0.85[AMR][1000 genomes]
rs73047679	0.85[AMR][1000 genomes]
rs73047683	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73047689	0.85[AMR][1000 genomes]
rs73047690	0.85[AMR][1000 genomes]
rs73047691	0.85[AMR][1000 genomes]
rs73047693	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73047696	0.85[AMR][1000 genomes]
rs73047697	0.85[AMR][1000 genomes]
rs73047699	0.85[AMR][1000 genomes]
rs73047700	0.85[AMR][1000 genomes]
rs73049462	0.85[AMR][1000 genomes]
rs73049463	0.85[AMR][1000 genomes]
rs73049466	0.85[AMR][1000 genomes]
rs73049468	0.85[AMR][1000 genomes]
rs73049477	0.85[AMR][1000 genomes]
rs73049479	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73049489	0.85[AMR][1000 genomes]
rs73049494	1.00[AMR][1000 genomes]
rs73049495	1.00[AMR][1000 genomes]
rs73049502	1.00[AMR][1000 genomes]
rs73051221	0.85[AMR][1000 genomes]
rs73051223	1.00[AMR][1000 genomes]
rs73051228	0.85[AMR][1000 genomes]
rs73051230	0.85[AMR][1000 genomes]
rs73051232	1.00[AMR][1000 genomes]
rs73051245	0.85[AMR][1000 genomes]
rs73051247	1.00[AMR][1000 genomes]
rs73051257	0.85[AMR][1000 genomes]
rs73051258	1.00[AMR][1000 genomes]
rs7512042	0.85[AMR][1000 genomes]
rs7513368	0.85[AMR][1000 genomes]
rs7513630	1.00[AMR][1000 genomes]
rs7517852	0.85[AMR][1000 genomes]
rs7522604	0.85[AMR][1000 genomes]
rs7523694	1.00[AMR][1000 genomes]
rs7525801	0.85[AMR][1000 genomes]
rs7526917	0.85[AMR][1000 genomes]
rs7527018	0.85[AMR][1000 genomes]
rs7527074	0.85[AMR][1000 genomes]
rs7528848	1.00[AMR][1000 genomes]
rs7528955	1.00[AMR][1000 genomes]
rs7531674	0.85[AMR][1000 genomes]
rs7533479	0.85[AMR][1000 genomes]
rs7536352	0.85[AMR][1000 genomes]
rs7537396	0.85[AMR][1000 genomes]
rs7542521	0.85[AMR][1000 genomes]
rs7545150	0.85[AMR][1000 genomes]
rs7549787	0.85[AMR][1000 genomes]
rs7550955	0.85[AMR][1000 genomes]
rs9730482	0.85[AMR][1000 genomes]
rs9919230	0.85[AMR][1000 genomes]
rs9919245	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003359	chr1:180300936-180727561	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	48 gene(s)	inside rSNPs	diseases
2	nsv949311	chr1:180438895-180692815	ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
3	nsv872578	chr1:180510771-180842344	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	esv3344943	chr1:180622014-180622486	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:180602000-180645200	Weak transcription	Gastric	stomach
2	chr1:180603600-180626400	Weak transcription	Fetal Lung	lung
3	chr1:180604000-180623200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr1:180605600-180625800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr1:180605800-180625000	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr1:180609800-180625800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr1:180612800-180626400	Weak transcription	Primary hematopoietic stem cells	blood
8	chr1:180613000-180623000	Weak transcription	Brain Anterior Caudate	brain
9	chr1:180613200-180632600	Weak transcription	Aorta	Aorta
10	chr1:180613400-180626400	Weak transcription	Adipose Nuclei	Adipose
11	chr1:180613400-180626600	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr1:180615600-180623800	Weak transcription	Primary B cells from cord blood	blood
13	chr1:180616200-180624800	Weak transcription	Primary T cells from cord blood	blood
14	chr1:180616400-180627200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr1:180616600-180622800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr1:180616600-180624400	Weak transcription	K562	blood
17	chr1:180616600-180626000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr1:180619600-180632600	Weak transcription	Pancreas	Pancrea
19	chr1:180619600-180634600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr1:180621600-180622600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr1:180622400-180626400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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