The 2.0 version of rSNPBase

Variant report

Variant rs12082519
Chromosome Location chr1:180632865-180632866
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:44 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:180602000-180645200 Weak transcription Gastric stomach
2 chr1:180619600-180634600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
3 chr1:180625800-180634800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
4 chr1:180627600-180640000 Weak transcription Fetal Heart heart
5 chr1:180627800-180634200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
6 chr1:180629200-180633800 Weak transcription Sigmoid Colon Sigmoid Colon
7 chr1:180629600-180641000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
8 chr1:180630800-180634400 Weak transcription Skeletal Muscle Female skeletal muscle
9 chr1:180631000-180633600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
10 chr1:180631000-180634200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
11 chr1:180631200-180635000 Weak transcription HMEC breast
12 chr1:180631200-180636000 Weak transcription Ovary ovary
13 chr1:180631400-180635000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
14 chr1:180631600-180644400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
15 chr1:180631800-180633400 Weak transcription Left Ventricle heart
16 chr1:180631800-180635000 ZNF genes & repeats Fetal Brain Female brain
17 chr1:180632000-180633000 ZNF genes & repeats Primary T cells from cord blood blood
18 chr1:180632200-180633000 ZNF genes & repeats Primary B cells from peripheral blood blood
19 chr1:180632200-180635000 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
20 chr1:180632200-180635000 ZNF genes & repeats Cortex derived primary cultured neurospheres brain
21 chr1:180632200-180644800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
22 chr1:180632400-180633600 ZNF genes & repeats Primary B cells from cord blood blood
23 chr1:180632400-180633800 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Female --
24 chr1:180632400-180634600 ZNF genes & repeats Foreskin Melanocyte Primary Cells skin01 Skin
25 chr1:180632400-180634800 ZNF genes & repeats Primary T helper 17 cells PMA-I stimulated --
26 chr1:180632400-180634800 ZNF genes & repeats Fetal Intestine Small intestine
27 chr1:180632400-180634800 Strong transcription Pancreatic Islets Pancreatic Islet
28 chr1:180632400-180635000 ZNF genes & repeats Ganglion Eminence derived primary cultured neurospheres brain
29 chr1:180632400-180635400 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
30 chr1:180632400-180635400 ZNF genes & repeats Brain Germinal Matrix brain
31 chr1:180632600-180633000 Weak transcription Primary T cells fromperipheralblood blood
32 chr1:180632600-180633000 Strong transcription Pancreas Pancrea
33 chr1:180632600-180633200 ZNF genes & repeats Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
34 chr1:180632600-180633600 Strong transcription Primary T helper cells fromperipheralblood blood
35 chr1:180632600-180633800 ZNF genes & repeats IMR90 fetal lung fibroblasts Cell Line lung
36 chr1:180632600-180633800 ZNF genes & repeats Fetal Intestine Large intestine
37 chr1:180632600-180634400 Strong transcription Aorta Aorta
38 chr1:180632600-180634800 ZNF genes & repeats H9 Derived Neuron Cultured Cells ES cell derived
39 chr1:180632600-180635000 ZNF genes & repeats Primary Natural Killer cells fromperipheralblood blood
40 chr1:180632800-180633200 Strong transcription A549 lung
41 chr1:180632800-180633400 ZNF genes & repeats Primary mononuclear cells fromperipheralblood Blood
42 chr1:180632800-180633800 ZNF genes & repeats Lung lung
43 chr1:180632800-180634400 Strong transcription Breast Myoepithelial Primary Cells Breast
44 chr1:180632800-180634800 ZNF genes & repeats Fetal Stomach stomach

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Last update: Aug 31, 2015