Variant report

Variant	rs6693245
Chromosome Location	chr1:180644892-180644893
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 280 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:276)

rs_ID	r²[population]
rs10399718	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10399760	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10399804	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10399869	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10914062	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10914063	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10914064	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10914065	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10914068	0.94[AFR][1000 genomes]
rs10914069	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10914070	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10914071	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10914072	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10914073	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10914081	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10914082	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10914085	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10914087	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10914088	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10914090	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10914091	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10914093	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10914098	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10914101	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10914102	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10914103	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10914105	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10914106	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10914119	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10914120	1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10914121	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11484582	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11484677	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11487433	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12058064	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12058106	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12058871	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12059242	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12059644	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12059678	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12059686	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12060123	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12063354	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12063893	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12065537	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12066418	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12066422	0.90[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12067061	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12067633	1.00[AMR][1000 genomes]
rs12067934	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12068624	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12068720	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12069405	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12069760	1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs12070064	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12070161	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12070595	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12071498	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12073086	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12073140	0.88[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12073289	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12075235	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12075809	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12076634	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12076875	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12076888	0.94[YRI][hapmap]
rs12076958	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12077123	0.87[AFR][1000 genomes]
rs12077610	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12078050	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12078652	1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12079208	1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12079213	1.00[AMR][1000 genomes]
rs12079923	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12079983	0.93[YRI][hapmap]
rs12080210	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12080481	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12080611	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12080816	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12080899	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12081201	1.00[YRI][hapmap]
rs12081764	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12081846	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12082250	1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12082289	1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12082519	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12082726	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12084318	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12084517	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12084841	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12086487	1.00[YRI][hapmap]
rs12087173	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12087411	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12087562	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12087806	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12088419	1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12088425	1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12088430	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12088431	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12088485	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12088750	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12088908	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12089155	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12089305	1.00[AMR][1000 genomes]
rs12089469	1.00[YRI][hapmap]
rs12090165	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12090251	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12090937	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12091686	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs12092161	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12092463	0.94[YRI][hapmap]
rs12092594	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12093445	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12093826	1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12094326	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12095684	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12097111	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12097114	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12097443	1.00[AMR][1000 genomes]
rs12097831	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28396858	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28772709	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28860229	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57032990	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57514172	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57581991	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57893270	0.85[AMR][1000 genomes]
rs58078052	0.85[AMR][1000 genomes]
rs58365677	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58414267	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58688129	0.85[AMR][1000 genomes]
rs58845755	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58917243	0.85[AMR][1000 genomes]
rs58925572	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58976920	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59013965	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59084656	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59197802	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59543576	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59741364	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59921476	0.85[AMR][1000 genomes]
rs59929457	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60159602	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60290602	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60396352	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60653579	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60823702	0.85[AMR][1000 genomes]
rs61058506	0.85[AMR][1000 genomes]
rs61530504	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61742073	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6425649	0.88[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6425650	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6425651	0.85[AMR][1000 genomes]
rs6425653	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6425654	1.00[MEX][hapmap];0.85[AMR][1000 genomes]
rs6657287	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6659121	1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6659262	0.85[AMR][1000 genomes]
rs6667050	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6668077	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6668578	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6671456	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6671987	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6672886	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6672994	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6675189	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs6675596	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6679698	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6679725	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6681878	1.00[ASW][hapmap];1.00[LWK][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6682446	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6682537	0.94[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6686781	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6686881	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6687073	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6688066	0.85[AMR][1000 genomes]
rs6688797	0.85[AMR][1000 genomes]
rs6692456	1.00[MEX][hapmap];0.85[AMR][1000 genomes]
rs6692867	1.00[ASW][hapmap];0.96[LWK][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6693045	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6694620	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6697358	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6698724	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6704318	0.85[AMR][1000 genomes]
rs73034723	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73034725	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73034733	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73034735	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73034738	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73034820	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73034824	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73034834	0.85[AMR][1000 genomes]
rs73034843	0.85[AMR][1000 genomes]
rs73034844	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73034846	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73034849	0.85[AMR][1000 genomes]
rs73034850	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73034852	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73034855	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73034858	0.85[AMR][1000 genomes]
rs73034861	0.85[AMR][1000 genomes]
rs73034864	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73034870	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73034874	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73034877	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73034880	0.85[AMR][1000 genomes]
rs73034884	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73034888	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73034894	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73034895	0.85[AMR][1000 genomes]
rs73036503	0.85[AMR][1000 genomes]
rs73036511	0.85[AMR][1000 genomes]
rs73036513	0.85[AMR][1000 genomes]
rs73036516	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73036523	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73036537	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73036574	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73036576	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73040964	0.85[AMR][1000 genomes]
rs73040975	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73040979	0.85[AMR][1000 genomes]
rs73042705	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73042707	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73042709	0.85[AMR][1000 genomes]
rs73042714	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73044538	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73044549	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73044553	0.85[AMR][1000 genomes]
rs73044557	0.85[AMR][1000 genomes]
rs73044560	0.85[AMR][1000 genomes]
rs73044573	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73045791	0.85[AMR][1000 genomes]
rs73045793	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73045794	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73045796	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73047683	0.85[AMR][1000 genomes]
rs73047693	0.85[AMR][1000 genomes]
rs73049473	0.85[AMR][1000 genomes]
rs73049479	0.85[AMR][1000 genomes]
rs73049489	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73049494	0.85[AMR][1000 genomes]
rs73049495	0.85[AMR][1000 genomes]
rs73049502	0.85[AMR][1000 genomes]
rs73051221	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73051223	0.85[AMR][1000 genomes]
rs73051228	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73051230	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73051232	0.85[AMR][1000 genomes]
rs73051245	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73051247	0.85[AMR][1000 genomes]
rs73051257	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73051258	0.85[AMR][1000 genomes]
rs7512042	0.93[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7513368	1.00[YRI][hapmap]
rs7513630	0.85[AMR][1000 genomes]
rs7517852	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7522212	1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7522604	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7523694	0.85[AMR][1000 genomes]
rs7525801	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7526917	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7527018	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7527074	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.94[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7528848	1.00[MEX][hapmap];0.85[AMR][1000 genomes]
rs7528955	0.85[AMR][1000 genomes]
rs7531674	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7533479	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7533512	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7537396	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7542521	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7545150	1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7549787	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7550955	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9730482	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9919230	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9919245	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003359	chr1:180300936-180727561	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	48 gene(s)	inside rSNPs	diseases
2	nsv949311	chr1:180438895-180692815	ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
3	nsv872578	chr1:180510771-180842344	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv947336	chr1:180642298-180656857	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:180602000-180645200	Weak transcription	Gastric	stomach
2	chr1:180633200-180672000	Weak transcription	K562	blood
3	chr1:180635200-180654800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr1:180636400-180647200	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr1:180636400-180651800	Weak transcription	Ovary	ovary
6	chr1:180640200-180662200	Weak transcription	Fetal Heart	heart
7	chr1:180640600-180660600	Weak transcription	Right Ventricle	heart
8	chr1:180641000-180653200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr1:180641200-180647400	Weak transcription	Fetal Intestine Small	intestine
10	chr1:180641200-180653400	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr1:180641200-180662800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr1:180641600-180661200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr1:180642200-180658200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr1:180642800-180646200	Weak transcription	Pancreas	Pancrea
15	chr1:180643000-180651400	Weak transcription	Primary B cells from cord blood	blood
16	chr1:180643000-180659000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr1:180643200-180647200	Weak transcription	Primary T cells from cord blood	blood
18	chr1:180643800-180645000	Enhancers	H1 Cell Line	embryonic stem cell
19	chr1:180643800-180645000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr1:180643800-180645200	Enhancers	ES-I3 Cell Line	embryonic stem cell
21	chr1:180643800-180645200	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr1:180644000-180645800	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr1:180644000-180646200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr1:180644000-180660400	Weak transcription	Primary T helper cells PMA-I stimulated	--
25	chr1:180644000-180660800	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr1:180644000-180662600	Weak transcription	Left Ventricle	heart
27	chr1:180644000-180663800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr1:180644200-180645000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
29	chr1:180644200-180645400	Enhancers	HUES48 Cell Line	embryonic stem cell
30	chr1:180644200-180645800	Enhancers	iPS-18 Cell Line	embryonic stem cell
31	chr1:180644200-180645800	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr1:180644400-180645000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr1:180644400-180645000	Enhancers	Stomach Mucosa	stomach
34	chr1:180644400-180645200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
35	chr1:180644400-180645200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr1:180644400-180645200	Enhancers	iPS-15b Cell Line	embryonic stem cell
37	chr1:180644400-180645200	Enhancers	A549	lung
38	chr1:180644600-180645200	Enhancers	Muscle Satellite Cultured Cells	--
39	chr1:180644600-180645200	Enhancers	NHEK	skin
40	chr1:180644800-180645000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
41	chr1:180644800-180645000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
42	chr1:180644800-180645000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr1:180644800-180645000	Enhancers	Aorta	Aorta
44	chr1:180644800-180645000	Enhancers	Small Intestine	intestine
45	chr1:180644800-180645200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr1:180644800-180645200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr1:180644800-180645400	Enhancers	HUVEC	blood vessel
48	chr1:180644800-180645600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links