The 2.0 version of rSNPBase

Variant report

Variant rs12088425
Chromosome Location chr1:180842822-180842823
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:95 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:180773400-180849200 Weak transcription Skeletal Muscle Female skeletal muscle
2 chr1:180773800-180853200 Weak transcription Sigmoid Colon Sigmoid Colon
3 chr1:180779800-180850800 Weak transcription Small Intestine intestine
4 chr1:180796400-180851000 Weak transcription Fetal Intestine Small intestine
5 chr1:180803600-180843200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
6 chr1:180805800-180881000 Weak transcription Aorta Aorta
7 chr1:180812200-180867000 Weak transcription Ovary ovary
8 chr1:180819200-180851000 Weak transcription Fetal Brain Male brain
9 chr1:180822000-180862800 Weak transcription Primary T killer memory cells from peripheral blood blood
10 chr1:180822800-180862800 Weak transcription Primary T killer naive cells fromperipheralblood blood
11 chr1:180823000-180854600 Weak transcription Primary T helper naive cells from peripheral blood blood
12 chr1:180823400-180843000 Weak transcription Primary T helper naive cells fromperipheralblood blood
13 chr1:180823600-180847800 Weak transcription Primary T cells from cord blood blood
14 chr1:180823600-180860000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
15 chr1:180823800-180851000 Weak transcription Fetal Kidney kidney
16 chr1:180823800-180851400 Weak transcription Pancreas Pancrea
17 chr1:180823800-180862600 Weak transcription Fetal Adrenal Gland Adrenal Gland
18 chr1:180824000-180848000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
19 chr1:180824000-180867600 Weak transcription Fetal Muscle Leg muscle
20 chr1:180824000-180880800 Weak transcription Right Ventricle heart
21 chr1:180824200-180851000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
22 chr1:180827800-180856600 Weak transcription Primary hematopoietic stem cells blood
23 chr1:180828000-180852400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
24 chr1:180828000-180853200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
25 chr1:180828000-180853200 Weak transcription NHEK skin
26 chr1:180828600-180867800 Weak transcription HSMM muscle
27 chr1:180828800-180851000 Weak transcription Brain Germinal Matrix brain
28 chr1:180830000-180867600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
29 chr1:180831000-180851400 Weak transcription Fetal Thymus thymus
30 chr1:180831200-180858600 Weak transcription Rectal Mucosa Donor 29 rectum
31 chr1:180831600-180847800 Weak transcription Fetal Brain Female brain
32 chr1:180831600-180851000 Weak transcription Brain Angular Gyrus brain
33 chr1:180831600-180852600 Weak transcription Fetal Lung lung
34 chr1:180832200-180848600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
35 chr1:180832400-180844400 Weak transcription HUVEC blood vessel
36 chr1:180832400-180848000 Weak transcription Fetal Heart heart
37 chr1:180832400-180850000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
38 chr1:180832400-180850000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
39 chr1:180832400-180850800 Weak transcription Brain Hippocampus Middle brain
40 chr1:180832400-180850800 Weak transcription NH-A brain
41 chr1:180832400-180851000 Weak transcription Cortex derived primary cultured neurospheres brain
42 chr1:180832400-180851000 Weak transcription Brain Anterior Caudate brain
43 chr1:180832400-180853200 Weak transcription Fetal Stomach stomach
44 chr1:180832600-180854400 Weak transcription Liver Liver
45 chr1:180832800-180861800 Weak transcription HepG2 liver
46 chr1:180833200-180851000 Weak transcription Brain Inferior Temporal Lobe brain
47 chr1:180833800-180847600 Weak transcription Stomach Smooth Muscle stomach
48 chr1:180834000-180849200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
49 chr1:180834200-180843400 Weak transcription Primary monocytes fromperipheralblood blood
50 chr1:180834200-180846400 Weak transcription Adipose Nuclei Adipose

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Last update: Aug 31, 2015