The 2.0 version of rSNPBase

Variant report

Variant rs6686781
Chromosome Location chr1:180778038-180778039
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:88 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:180713000-180814200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
2 chr1:180741600-180784000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
3 chr1:180754800-180781600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
4 chr1:180755000-180783800 Weak transcription Fetal Intestine Large intestine
5 chr1:180755400-180803800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
6 chr1:180755400-180820400 Weak transcription Primary T helper naive cells from peripheral blood blood
7 chr1:180756000-180781400 Weak transcription Liver Liver
8 chr1:180756800-180778800 Weak transcription iPS-20b Cell Line embryonic stem cell
9 chr1:180756800-180810200 Weak transcription Fetal Brain Male brain
10 chr1:180757400-180779400 Weak transcription Left Ventricle heart
11 chr1:180758000-180804000 Weak transcription Duodenum Mucosa Duodenum
12 chr1:180758600-180781200 Weak transcription Adipose Nuclei Adipose
13 chr1:180759000-180794800 Weak transcription Fetal Intestine Small intestine
14 chr1:180761200-180789200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
15 chr1:180761400-180784400 Weak transcription NHEK skin
16 chr1:180761400-180794000 Weak transcription Primary B cells from peripheral blood blood
17 chr1:180761400-180796400 Weak transcription HMEC breast
18 chr1:180761400-180804600 Weak transcription Aorta Aorta
19 chr1:180762000-180780600 Weak transcription Osteobl bone
20 chr1:180762000-180785200 Weak transcription Primary hematopoietic stem cells blood
21 chr1:180763200-180780600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
22 chr1:180763600-180806800 Weak transcription Psoas Muscle Psoas
23 chr1:180763800-180780400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
24 chr1:180766200-180784800 Weak transcription Fetal Lung lung
25 chr1:180767400-180820400 Weak transcription Primary T killer memory cells from peripheral blood blood
26 chr1:180767600-180795400 Weak transcription Thymus Thymus
27 chr1:180768000-180812000 Weak transcription Pancreas Pancrea
28 chr1:180768600-180781200 Weak transcription Primary T helper cells PMA-I stimulated --
29 chr1:180769000-180802000 Weak transcription Primary T helper naive cells fromperipheralblood blood
30 chr1:180769800-180781600 Weak transcription Lung lung
31 chr1:180770400-180783600 Weak transcription Fetal Heart heart
32 chr1:180771000-180783800 Weak transcription HepG2 liver
33 chr1:180771000-180813600 Weak transcription Rectal Mucosa Donor 29 rectum
34 chr1:180771200-180785600 Weak transcription HUVEC blood vessel
35 chr1:180771800-180780400 Weak transcription HSMM muscle
36 chr1:180772000-180789400 Weak transcription Duodenum Smooth Muscle Duodenum
37 chr1:180772000-180789400 Weak transcription Rectal Mucosa Donor 31 rectum
38 chr1:180772000-180823200 Weak transcription Fetal Stomach stomach
39 chr1:180772200-180801800 Weak transcription Primary hematopoietic stem cells short term culture blood
40 chr1:180772400-180784600 Weak transcription Pancreatic Islets Pancreatic Islet
41 chr1:180773000-180799800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
42 chr1:180773000-180802200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
43 chr1:180773400-180849200 Weak transcription Skeletal Muscle Female skeletal muscle
44 chr1:180773800-180796600 Weak transcription Spleen Spleen
45 chr1:180773800-180853200 Weak transcription Sigmoid Colon Sigmoid Colon
46 chr1:180774000-180806800 Weak transcription Placenta Placenta
47 chr1:180774200-180778400 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
48 chr1:180774200-180785000 Weak transcription iPS-18 Cell Line embryonic stem cell
49 chr1:180774400-180785800 Weak transcription Esophagus oesophagus
50 chr1:180774400-180797200 Weak transcription Fetal Muscle Trunk muscle

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Last update: Aug 31, 2015