The 2.0 version of rSNPBase

Variant report

Variant rs12088431
Chromosome Location chr1:180782692-180782693
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:89 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:180713000-180814200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
2 chr1:180741600-180784000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
3 chr1:180755000-180783800 Weak transcription Fetal Intestine Large intestine
4 chr1:180755400-180803800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
5 chr1:180755400-180820400 Weak transcription Primary T helper naive cells from peripheral blood blood
6 chr1:180756800-180810200 Weak transcription Fetal Brain Male brain
7 chr1:180758000-180804000 Weak transcription Duodenum Mucosa Duodenum
8 chr1:180759000-180794800 Weak transcription Fetal Intestine Small intestine
9 chr1:180761200-180789200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
10 chr1:180761400-180784400 Weak transcription NHEK skin
11 chr1:180761400-180794000 Weak transcription Primary B cells from peripheral blood blood
12 chr1:180761400-180796400 Weak transcription HMEC breast
13 chr1:180761400-180804600 Weak transcription Aorta Aorta
14 chr1:180762000-180785200 Weak transcription Primary hematopoietic stem cells blood
15 chr1:180763600-180806800 Weak transcription Psoas Muscle Psoas
16 chr1:180766200-180784800 Weak transcription Fetal Lung lung
17 chr1:180767400-180820400 Weak transcription Primary T killer memory cells from peripheral blood blood
18 chr1:180767600-180795400 Weak transcription Thymus Thymus
19 chr1:180768000-180812000 Weak transcription Pancreas Pancrea
20 chr1:180769000-180802000 Weak transcription Primary T helper naive cells fromperipheralblood blood
21 chr1:180770400-180783600 Weak transcription Fetal Heart heart
22 chr1:180771000-180783800 Weak transcription HepG2 liver
23 chr1:180771000-180813600 Weak transcription Rectal Mucosa Donor 29 rectum
24 chr1:180771200-180785600 Weak transcription HUVEC blood vessel
25 chr1:180772000-180789400 Weak transcription Duodenum Smooth Muscle Duodenum
26 chr1:180772000-180789400 Weak transcription Rectal Mucosa Donor 31 rectum
27 chr1:180772000-180823200 Weak transcription Fetal Stomach stomach
28 chr1:180772200-180801800 Weak transcription Primary hematopoietic stem cells short term culture blood
29 chr1:180772400-180784600 Weak transcription Pancreatic Islets Pancreatic Islet
30 chr1:180773000-180799800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
31 chr1:180773000-180802200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
32 chr1:180773400-180849200 Weak transcription Skeletal Muscle Female skeletal muscle
33 chr1:180773800-180796600 Weak transcription Spleen Spleen
34 chr1:180773800-180853200 Weak transcription Sigmoid Colon Sigmoid Colon
35 chr1:180774000-180806800 Weak transcription Placenta Placenta
36 chr1:180774200-180785000 Weak transcription iPS-18 Cell Line embryonic stem cell
37 chr1:180774400-180785800 Weak transcription Esophagus oesophagus
38 chr1:180774400-180797200 Weak transcription Fetal Muscle Trunk muscle
39 chr1:180774600-180783000 Weak transcription Skeletal Muscle Male skeletal muscle
40 chr1:180774600-180783200 Weak transcription Brain Anterior Caudate brain
41 chr1:180775000-180783200 Weak transcription Fetal Kidney kidney
42 chr1:180775000-180787400 Weak transcription GM12878-XiMat blood
43 chr1:180775000-180794000 Weak transcription NH-A brain
44 chr1:180775000-180831600 Weak transcription Brain Hippocampus Middle brain
45 chr1:180775200-180783600 Weak transcription K562 blood
46 chr1:180775600-180796400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
47 chr1:180776400-180798400 Weak transcription Stomach Smooth Muscle stomach
48 chr1:180776400-180801800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
49 chr1:180776600-180790400 Weak transcription Primary T killer naive cells fromperipheralblood blood
50 chr1:180776600-180801800 Weak transcription Dnd41 blood

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Last update: Aug 31, 2015