Variant report

Variant	rs10914072
Chromosome Location	chr1:180665680-180665681
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 284 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:280)

rs_ID	r²[population]
rs10399718	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10399760	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10399804	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10399869	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10914062	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10914063	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10914064	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10914065	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10914068	1.00[AFR][1000 genomes]
rs10914069	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10914070	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10914071	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10914073	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10914081	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10914082	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10914085	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10914087	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10914088	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10914090	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10914091	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10914093	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10914098	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10914101	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10914102	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10914103	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10914105	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10914106	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10914119	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10914120	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10914121	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11484582	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11484677	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11487433	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12058064	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12058106	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12058871	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12059242	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12059644	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12059678	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12059686	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12060123	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12063354	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12063893	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12065537	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12066418	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12066422	0.90[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12067061	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12067633	1.00[AMR][1000 genomes]
rs12067934	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12068624	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12068720	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12069405	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12069760	1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs12070064	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12070161	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12070595	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12071498	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12073086	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12073140	0.88[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12073289	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12075235	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12075809	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12076634	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12076875	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12076888	0.94[YRI][hapmap]
rs12076958	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12077123	0.90[AFR][1000 genomes]
rs12077610	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12078050	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12078652	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12079208	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12079213	1.00[AMR][1000 genomes]
rs12079923	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12079983	0.93[YRI][hapmap]
rs12080210	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12080481	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12080611	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12080816	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12080899	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12081201	1.00[YRI][hapmap]
rs12081764	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12081846	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12082250	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12082289	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12082519	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12082726	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12084318	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12084517	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12084841	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12086487	1.00[YRI][hapmap]
rs12087173	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12087411	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12087562	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12087806	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12088182	1.00[MEX][hapmap]
rs12088419	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12088425	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12088430	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12088431	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12088485	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12088750	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12088908	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12089155	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12089305	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs12089469	1.00[YRI][hapmap]
rs12090165	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12090251	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12090937	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12091686	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs12092161	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12092463	0.94[YRI][hapmap]
rs12092594	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12093445	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12093826	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12094326	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12095486	1.00[MEX][hapmap];0.82[MKK][hapmap]
rs12095684	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12096475	1.00[MEX][hapmap]
rs12097111	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12097114	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12097443	1.00[AMR][1000 genomes]
rs12097831	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28396858	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28772709	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28860229	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57032990	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57514172	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57581991	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57893270	0.85[AMR][1000 genomes]
rs58078052	0.85[AMR][1000 genomes]
rs58365677	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58414267	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58688129	0.85[AMR][1000 genomes]
rs58845755	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58917243	0.85[AMR][1000 genomes]
rs58925572	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58976920	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59013965	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59084656	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59197802	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59543576	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59741364	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59921476	0.85[AMR][1000 genomes]
rs59929457	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60159602	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60290602	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60396352	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60653579	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60823702	0.85[AMR][1000 genomes]
rs61058506	0.85[AMR][1000 genomes]
rs61530504	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61742073	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6425649	0.88[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6425650	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6425651	0.85[AMR][1000 genomes]
rs6425653	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6425654	1.00[MEX][hapmap];0.85[AMR][1000 genomes]
rs6657287	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6659121	1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6659262	0.85[AMR][1000 genomes]
rs6667050	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6668077	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6668578	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6671456	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6671987	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6672886	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6672994	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6675189	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs6675596	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6676373	0.81[YRI][hapmap]
rs6679698	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6679725	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6681878	1.00[ASW][hapmap];1.00[LWK][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6682446	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6682537	0.94[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6686781	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6686881	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6687073	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6688066	0.85[AMR][1000 genomes]
rs6688797	0.85[AMR][1000 genomes]
rs6692456	1.00[MEX][hapmap];0.85[AMR][1000 genomes]
rs6692867	1.00[ASW][hapmap];0.96[LWK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6693045	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6693245	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6694620	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6697358	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6698724	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6704318	0.85[AMR][1000 genomes]
rs73034723	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73034725	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73034733	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73034735	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73034738	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73034820	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73034824	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73034834	0.85[AMR][1000 genomes]
rs73034843	0.85[AMR][1000 genomes]
rs73034844	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73034846	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73034849	0.85[AMR][1000 genomes]
rs73034850	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73034852	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73034855	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73034858	0.85[AMR][1000 genomes]
rs73034861	0.85[AMR][1000 genomes]
rs73034864	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73034870	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73034874	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73034877	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73034880	0.85[AMR][1000 genomes]
rs73034884	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73034888	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73034894	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73034895	0.85[AMR][1000 genomes]
rs73036503	0.85[AMR][1000 genomes]
rs73036511	0.85[AMR][1000 genomes]
rs73036513	0.85[AMR][1000 genomes]
rs73036516	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73036523	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73036537	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73036574	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73036576	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73040964	0.85[AMR][1000 genomes]
rs73040975	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73040979	0.85[AMR][1000 genomes]
rs73042705	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73042707	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73042709	0.85[AMR][1000 genomes]
rs73042714	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73044538	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73044549	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73044553	0.85[AMR][1000 genomes]
rs73044557	0.85[AMR][1000 genomes]
rs73044560	0.85[AMR][1000 genomes]
rs73044573	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73045791	0.85[AMR][1000 genomes]
rs73045793	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73045794	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73045796	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73047683	0.85[AMR][1000 genomes]
rs73047693	0.85[AMR][1000 genomes]
rs73049473	0.85[AMR][1000 genomes]
rs73049479	0.85[AMR][1000 genomes]
rs73049489	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73049494	0.85[AMR][1000 genomes]
rs73049495	0.85[AMR][1000 genomes]
rs73049502	0.85[AMR][1000 genomes]
rs73051221	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73051223	0.85[AMR][1000 genomes]
rs73051228	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73051230	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73051232	0.85[AMR][1000 genomes]
rs73051245	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73051247	0.85[AMR][1000 genomes]
rs73051257	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73051258	0.85[AMR][1000 genomes]
rs7512042	0.93[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7513368	1.00[YRI][hapmap]
rs7513630	0.85[AMR][1000 genomes]
rs7517852	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7522212	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7522604	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7523694	0.85[AMR][1000 genomes]
rs7525801	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7526917	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7527018	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7527074	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.94[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7528848	1.00[MEX][hapmap];0.85[AMR][1000 genomes]
rs7528955	0.85[AMR][1000 genomes]
rs7531674	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7533479	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7533512	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7537396	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7542521	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7545150	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7549787	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7550955	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9730482	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9919230	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9919245	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003359	chr1:180300936-180727561	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	48 gene(s)	inside rSNPs	diseases
2	nsv949311	chr1:180438895-180692815	ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
3	nsv872578	chr1:180510771-180842344	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	esv2754432	chr1:180645343-180692343	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:180633200-180672000	Weak transcription	K562	blood
2	chr1:180649000-180666200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr1:180650200-180669800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr1:180652000-180672400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr1:180665600-180666000	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links