The 2.0 version of rSNPBase

Variant report

Variant rs12059242
Chromosome Location chr1:180804836-180804837
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:87 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:180713000-180814200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
2 chr1:180755400-180820400 Weak transcription Primary T helper naive cells from peripheral blood blood
3 chr1:180756800-180810200 Weak transcription Fetal Brain Male brain
4 chr1:180763600-180806800 Weak transcription Psoas Muscle Psoas
5 chr1:180767400-180820400 Weak transcription Primary T killer memory cells from peripheral blood blood
6 chr1:180768000-180812000 Weak transcription Pancreas Pancrea
7 chr1:180771000-180813600 Weak transcription Rectal Mucosa Donor 29 rectum
8 chr1:180772000-180823200 Weak transcription Fetal Stomach stomach
9 chr1:180773400-180849200 Weak transcription Skeletal Muscle Female skeletal muscle
10 chr1:180773800-180853200 Weak transcription Sigmoid Colon Sigmoid Colon
11 chr1:180774000-180806800 Weak transcription Placenta Placenta
12 chr1:180775000-180831600 Weak transcription Brain Hippocampus Middle brain
13 chr1:180778600-180805600 Weak transcription Brain Germinal Matrix brain
14 chr1:180779000-180807400 Weak transcription Right Ventricle heart
15 chr1:180779800-180850800 Weak transcription Small Intestine intestine
16 chr1:180781600-180805600 Weak transcription HUES64 Cell Line embryonic stem cell
17 chr1:180781800-180807000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
18 chr1:180781800-180810400 Weak transcription HSMM muscle
19 chr1:180782200-180817800 Weak transcription Lung lung
20 chr1:180782600-180809000 Weak transcription Primary monocytes fromperipheralblood blood
21 chr1:180784800-180811600 Weak transcription HSMMtube muscle
22 chr1:180785600-180805400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
23 chr1:180789600-180809200 Weak transcription Rectal Mucosa Donor 31 rectum
24 chr1:180791400-180822600 Weak transcription Fetal Heart heart
25 chr1:180793200-180810800 Weak transcription Osteobl bone
26 chr1:180796200-180807800 Weak transcription Thymus Thymus
27 chr1:180796400-180851000 Weak transcription Fetal Intestine Small intestine
28 chr1:180796600-180827200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
29 chr1:180796800-180817400 Weak transcription HepG2 liver
30 chr1:180796800-180827400 Weak transcription NHEK skin
31 chr1:180796800-180831600 Weak transcription A549 lung
32 chr1:180797000-180822000 Weak transcription HUVEC blood vessel
33 chr1:180800200-180806200 Weak transcription Primary T killer naive cells fromperipheralblood blood
34 chr1:180800200-180810600 Weak transcription HUES6 Cell Line embryonic stem cell
35 chr1:180800200-180811400 Weak transcription Ovary ovary
36 chr1:180802400-180808000 Weak transcription Duodenum Smooth Muscle Duodenum
37 chr1:180802400-180810200 Weak transcription Brain Angular Gyrus brain
38 chr1:180802400-180811600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
39 chr1:180802400-180811600 Weak transcription Fetal Lung lung
40 chr1:180802600-180805600 Weak transcription Primary T helper naive cells fromperipheralblood blood
41 chr1:180802600-180805800 Weak transcription HUES48 Cell Line embryonic stem cell
42 chr1:180802600-180833000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
43 chr1:180802600-180834600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
44 chr1:180802800-180805000 Strong transcription Primary B cells from peripheral blood blood
45 chr1:180802800-180806000 Weak transcription Primary hematopoietic stem cells short term culture blood
46 chr1:180802800-180823200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
47 chr1:180803000-180805000 Weak transcription Fetal Intestine Large intestine
48 chr1:180803000-180822800 Weak transcription Colon Smooth Muscle Colon
49 chr1:180803200-180805200 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
50 chr1:180803200-180805800 Weak transcription Primary T regulatory cells fromperipheralblood blood

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Last update: Aug 31, 2015