The 2.0 version of rSNPBase

Variant report

Variant rs6675189
Chromosome Location chr1:180612725-180612726
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:62 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:180602000-180615800 Weak transcription Lung lung
2 chr1:180602000-180618800 Weak transcription Pancreas Pancrea
3 chr1:180602000-180645200 Weak transcription Gastric stomach
4 chr1:180603000-180614800 Weak transcription Primary T regulatory cells fromperipheralblood blood
5 chr1:180603200-180614400 Weak transcription Primary B cells from cord blood blood
6 chr1:180603200-180615200 Weak transcription HSMM muscle
7 chr1:180603200-180615800 Weak transcription HUES6 Cell Line embryonic stem cell
8 chr1:180603200-180616400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
9 chr1:180603200-180622400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
10 chr1:180603400-180613000 Weak transcription Ovary ovary
11 chr1:180603400-180614800 Weak transcription Sigmoid Colon Sigmoid Colon
12 chr1:180603400-180615400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
13 chr1:180603400-180615600 Weak transcription HUVEC blood vessel
14 chr1:180603400-180617000 Weak transcription Monocytes-CD14+_RO01746 blood
15 chr1:180603400-180619400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
16 chr1:180603600-180612800 Weak transcription Aorta Aorta
17 chr1:180603600-180626400 Weak transcription Fetal Lung lung
18 chr1:180603800-180612800 Weak transcription Primary T cells from cord blood blood
19 chr1:180603800-180613400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
20 chr1:180603800-180614600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
21 chr1:180604000-180613200 Weak transcription Brain Germinal Matrix brain
22 chr1:180604000-180623200 Weak transcription Primary T helper naive cells fromperipheralblood blood
23 chr1:180604800-180617000 Weak transcription Dnd41 blood
24 chr1:180605600-180625800 Weak transcription Primary T killer memory cells from peripheral blood blood
25 chr1:180605800-180613200 Weak transcription Fetal Brain Female brain
26 chr1:180605800-180615000 Weak transcription HUES64 Cell Line embryonic stem cell
27 chr1:180605800-180622000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
28 chr1:180605800-180625000 Weak transcription Primary T helper cells fromperipheralblood blood
29 chr1:180606000-180612800 Weak transcription Right Ventricle heart
30 chr1:180606000-180614000 Weak transcription Left Ventricle heart
31 chr1:180606000-180618200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
32 chr1:180607000-180612800 Weak transcription Fetal Brain Male brain
33 chr1:180608200-180617000 Weak transcription Fetal Intestine Large intestine
34 chr1:180608600-180615600 Enhancers Fetal Heart heart
35 chr1:180609800-180614800 Weak transcription Small Intestine intestine
36 chr1:180609800-180625800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
37 chr1:180610000-180615400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
38 chr1:180610200-180612800 Enhancers Pancreatic Islets Pancreatic Islet
39 chr1:180610200-180617000 Weak transcription Primary B cells from peripheral blood blood
40 chr1:180610600-180614800 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
41 chr1:180611200-180615400 Genic enhancers K562 blood
42 chr1:180611400-180613000 Weak transcription Psoas Muscle Psoas
43 chr1:180611600-180615200 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
44 chr1:180612000-180612800 Strong transcription Primary hematopoietic stem cells blood
45 chr1:180612000-180613200 Enhancers Cortex derived primary cultured neurospheres brain
46 chr1:180612200-180613400 Enhancers Skeletal Muscle Male skeletal muscle
47 chr1:180612400-180613200 Enhancers A549 lung
48 chr1:180612400-180613400 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
49 chr1:180612400-180613400 Enhancers Brain Substantia Nigra brain
50 chr1:180612400-180613400 Enhancers Colon Smooth Muscle Colon

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Last update: Aug 31, 2015