The 2.0 version of rSNPBase

Variant report

Variant rs58826347
Chromosome Location chr1:180603798-180603799
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:79 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:180600800-180603800 Active TSS H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr1:180600800-180604400 Active TSS Fetal Brain Male brain
3 chr1:180601000-180604200 Active TSS Pancreatic Islets Pancreatic Islet
4 chr1:180601000-180606000 Active TSS Right Ventricle heart
5 chr1:180601200-180605800 Active TSS Breast Myoepithelial Primary Cells Breast
6 chr1:180601800-180603800 Active TSS Brain Germinal Matrix brain
7 chr1:180601800-180603800 Flanking Active TSS Dnd41 blood
8 chr1:180602000-180615800 Weak transcription Lung lung
9 chr1:180602000-180618800 Weak transcription Pancreas Pancrea
10 chr1:180602000-180645200 Weak transcription Gastric stomach
11 chr1:180602200-180605000 Enhancers Primary T helper memory cells from peripheral blood 2 blood
12 chr1:180602200-180608200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
13 chr1:180602200-180608200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
14 chr1:180602400-180603800 Enhancers Primary T killer memory cells from peripheral blood blood
15 chr1:180602400-180603800 Flanking Active TSS NHEK skin
16 chr1:180602400-180604000 Enhancers Primary T helper naive cells fromperipheralblood blood
17 chr1:180602400-180605600 Active TSS Fetal Brain Female brain
18 chr1:180602400-180605800 Enhancers Primary T helper cells fromperipheralblood blood
19 chr1:180602400-180611000 Weak transcription Stomach Mucosa stomach
20 chr1:180602400-180612400 Weak transcription Colon Smooth Muscle Colon
21 chr1:180602400-180612600 Weak transcription Rectal Smooth Muscle rectum
22 chr1:180602600-180603800 Enhancers Primary T helper memory cells from peripheral blood 1 blood
23 chr1:180602800-180603800 Flanking Active TSS Ganglion Eminence derived primary cultured neurospheres brain
24 chr1:180603000-180604200 Flanking Active TSS H9 Derived Neuron Cultured Cells ES cell derived
25 chr1:180603000-180605000 Enhancers Primary T helper cells PMA-I stimulated --
26 chr1:180603000-180614800 Weak transcription Primary T regulatory cells fromperipheralblood blood
27 chr1:180603200-180603800 Active TSS iPS-20b Cell Line embryonic stem cell
28 chr1:180603200-180603800 Enhancers Primary T cells from cord blood blood
29 chr1:180603200-180603800 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
30 chr1:180603200-180603800 Active TSS Brain Angular Gyrus brain
31 chr1:180603200-180603800 Enhancers Fetal Heart heart
32 chr1:180603200-180603800 Active TSS GM12878-XiMat blood
33 chr1:180603200-180604000 Weak transcription Fetal Intestine Large intestine
34 chr1:180603200-180604800 Weak transcription Small Intestine intestine
35 chr1:180603200-180606000 Weak transcription Liver Liver
36 chr1:180603200-180606800 Weak transcription NH-A brain
37 chr1:180603200-180612000 Weak transcription Primary hematopoietic stem cells blood
38 chr1:180603200-180614400 Weak transcription Primary B cells from cord blood blood
39 chr1:180603200-180615200 Weak transcription HSMM muscle
40 chr1:180603200-180615800 Weak transcription HUES6 Cell Line embryonic stem cell
41 chr1:180603200-180616400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
42 chr1:180603200-180622400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
43 chr1:180603400-180603800 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
44 chr1:180603400-180603800 Enhancers A549 lung
45 chr1:180603400-180603800 Enhancers Hela-S3 cervix
46 chr1:180603400-180603800 Enhancers HepG2 liver
47 chr1:180603400-180604000 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
48 chr1:180603400-180604600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
49 chr1:180603400-180604600 Weak transcription Skeletal Muscle Female skeletal muscle
50 chr1:180603400-180605000 Enhancers Cortex derived primary cultured neurospheres brain

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Last update: Aug 31, 2015