The 2.0 version of rSNPBase

Variant report

Variant rs12084517
Chromosome Location chr1:180774795-180774796
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:83 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:180713000-180814200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
2 chr1:180740800-180775600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
3 chr1:180741600-180784000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
4 chr1:180754800-180781600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
5 chr1:180755000-180783800 Weak transcription Fetal Intestine Large intestine
6 chr1:180755400-180775800 Weak transcription Primary T killer naive cells fromperipheralblood blood
7 chr1:180755400-180803800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
8 chr1:180755400-180820400 Weak transcription Primary T helper naive cells from peripheral blood blood
9 chr1:180755600-180775200 Weak transcription Primary T helper cells fromperipheralblood blood
10 chr1:180755800-180777800 Weak transcription Fetal Brain Female brain
11 chr1:180756000-180781400 Weak transcription Liver Liver
12 chr1:180756800-180778800 Weak transcription iPS-20b Cell Line embryonic stem cell
13 chr1:180756800-180810200 Weak transcription Fetal Brain Male brain
14 chr1:180757400-180779400 Weak transcription Left Ventricle heart
15 chr1:180758000-180804000 Weak transcription Duodenum Mucosa Duodenum
16 chr1:180758600-180781200 Weak transcription Adipose Nuclei Adipose
17 chr1:180759000-180775400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
18 chr1:180759000-180776800 Weak transcription Primary T cells from cord blood blood
19 chr1:180759000-180794800 Weak transcription Fetal Intestine Small intestine
20 chr1:180759400-180775200 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
21 chr1:180759600-180775600 Weak transcription Cortex derived primary cultured neurospheres brain
22 chr1:180761200-180789200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
23 chr1:180761400-180784400 Weak transcription NHEK skin
24 chr1:180761400-180794000 Weak transcription Primary B cells from peripheral blood blood
25 chr1:180761400-180796400 Weak transcription HMEC breast
26 chr1:180761400-180804600 Weak transcription Aorta Aorta
27 chr1:180762000-180780600 Weak transcription Osteobl bone
28 chr1:180762000-180785200 Weak transcription Primary hematopoietic stem cells blood
29 chr1:180762600-180775600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
30 chr1:180762800-180775400 Weak transcription Primary monocytes fromperipheralblood blood
31 chr1:180763200-180775000 Weak transcription Monocytes-CD14+_RO01746 blood
32 chr1:180763200-180775200 Weak transcription Muscle Satellite Cultured Cells --
33 chr1:180763200-180780600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
34 chr1:180763600-180806800 Weak transcription Psoas Muscle Psoas
35 chr1:180763800-180780400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
36 chr1:180765000-180775200 Weak transcription HUES48 Cell Line embryonic stem cell
37 chr1:180766200-180784800 Weak transcription Fetal Lung lung
38 chr1:180767400-180820400 Weak transcription Primary T killer memory cells from peripheral blood blood
39 chr1:180767600-180795400 Weak transcription Thymus Thymus
40 chr1:180768000-180812000 Weak transcription Pancreas Pancrea
41 chr1:180768600-180781200 Weak transcription Primary T helper cells PMA-I stimulated --
42 chr1:180769000-180802000 Weak transcription Primary T helper naive cells fromperipheralblood blood
43 chr1:180769800-180781600 Weak transcription Lung lung
44 chr1:180770400-180775200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
45 chr1:180770400-180783600 Weak transcription Fetal Heart heart
46 chr1:180770800-180775600 Weak transcription Stomach Smooth Muscle stomach
47 chr1:180771000-180783800 Weak transcription HepG2 liver
48 chr1:180771000-180813600 Weak transcription Rectal Mucosa Donor 29 rectum
49 chr1:180771200-180785600 Weak transcription HUVEC blood vessel
50 chr1:180771400-180778000 Weak transcription Brain Germinal Matrix brain

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Last update: Aug 31, 2015