Variant report

Variant	rs12080899
Chromosome Location	chr1:180678907-180678908
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 271 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:267)

rs_ID	r²[population]
rs10399718	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10399760	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10399804	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10399869	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10914062	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10914063	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10914064	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10914065	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10914068	0.97[AFR][1000 genomes]
rs10914069	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10914070	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10914071	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10914072	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10914073	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10914081	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10914082	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10914085	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10914087	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10914088	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10914090	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10914091	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10914093	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10914098	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10914101	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10914102	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10914103	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10914105	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10914106	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10914119	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10914120	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10914121	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11484582	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11484677	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11487433	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12058064	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12058106	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12058871	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12059242	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12059644	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12059678	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12059686	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12060123	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12063354	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12063893	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12065537	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12066418	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12066422	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12067061	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12067633	1.00[AMR][1000 genomes]
rs12067934	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12068624	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12068720	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12069405	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12070064	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12070161	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12070595	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12071498	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12073086	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12073140	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12073289	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12075235	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12075809	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12076634	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12076875	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12076958	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12077123	0.87[AFR][1000 genomes]
rs12077610	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12078050	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12078652	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12079208	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12079213	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12079923	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12080210	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12080481	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12080611	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12080816	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12081764	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12081846	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12082250	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12082289	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12082519	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12082726	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12084318	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12084517	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12084841	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12087173	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12087411	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12087562	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12087806	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12088419	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12088425	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12088430	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12088431	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12088485	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12088750	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12088908	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12089155	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12089305	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12090165	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12090251	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12090937	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12091686	0.85[AFR][1000 genomes]
rs12092161	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12092594	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12093445	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12093826	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12094326	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12095684	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12097111	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12097114	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12097443	1.00[AMR][1000 genomes]
rs12097831	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28396858	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28772709	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28860229	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57032990	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57514172	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57581991	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57893270	0.85[AMR][1000 genomes]
rs58078052	0.85[AMR][1000 genomes]
rs58365677	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58414267	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58688129	0.85[AMR][1000 genomes]
rs58845755	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58917243	0.85[AMR][1000 genomes]
rs58925572	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58976920	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59013965	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59084656	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59197802	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59543576	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59741364	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59921476	0.85[AMR][1000 genomes]
rs59929457	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60159602	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60290602	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60396352	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60653579	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60823702	0.85[AMR][1000 genomes]
rs61058506	0.85[AMR][1000 genomes]
rs61530504	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61742073	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6425649	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6425650	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6425651	0.85[AMR][1000 genomes]
rs6425653	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6425654	0.85[AMR][1000 genomes]
rs6657287	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6659121	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6659262	0.85[AMR][1000 genomes]
rs6667050	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6668077	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6668578	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6671456	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6671987	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6672886	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6672994	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6675596	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6679698	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6679725	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6681878	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6682446	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6682537	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6686781	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6686881	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6687073	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6688066	0.85[AMR][1000 genomes]
rs6688797	0.85[AMR][1000 genomes]
rs6692456	0.85[AMR][1000 genomes]
rs6692867	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6693045	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6693245	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6694620	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6697358	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6698724	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6704318	0.85[AMR][1000 genomes]
rs73034723	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73034725	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73034733	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73034735	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73034738	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73034820	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73034824	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73034834	0.85[AMR][1000 genomes]
rs73034843	0.85[AMR][1000 genomes]
rs73034844	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73034846	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73034849	0.85[AMR][1000 genomes]
rs73034850	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73034852	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73034855	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73034858	0.85[AMR][1000 genomes]
rs73034861	0.85[AMR][1000 genomes]
rs73034864	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73034870	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73034874	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73034877	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73034880	0.85[AMR][1000 genomes]
rs73034884	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73034888	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73034894	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73034895	0.85[AMR][1000 genomes]
rs73036503	0.85[AMR][1000 genomes]
rs73036511	0.85[AMR][1000 genomes]
rs73036513	0.85[AMR][1000 genomes]
rs73036516	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73036523	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73036537	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73036574	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73036576	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73040964	0.85[AMR][1000 genomes]
rs73040975	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73040979	0.85[AMR][1000 genomes]
rs73042705	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73042707	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73042709	0.85[AMR][1000 genomes]
rs73042714	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73044538	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73044549	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73044553	0.85[AMR][1000 genomes]
rs73044557	0.85[AMR][1000 genomes]
rs73044560	0.85[AMR][1000 genomes]
rs73044573	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73045791	0.85[AMR][1000 genomes]
rs73045793	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73045794	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73045796	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73047683	0.85[AMR][1000 genomes]
rs73047693	0.85[AMR][1000 genomes]
rs73049473	0.85[AMR][1000 genomes]
rs73049479	0.85[AMR][1000 genomes]
rs73049489	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73049494	0.85[AMR][1000 genomes]
rs73049495	0.85[AMR][1000 genomes]
rs73049502	0.85[AMR][1000 genomes]
rs73051221	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73051223	0.85[AMR][1000 genomes]
rs73051228	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73051230	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73051232	0.85[AMR][1000 genomes]
rs73051245	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73051247	0.85[AMR][1000 genomes]
rs73051257	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73051258	0.85[AMR][1000 genomes]
rs7512042	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7513630	0.85[AMR][1000 genomes]
rs7517852	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7522212	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7522604	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7523694	0.85[AMR][1000 genomes]
rs7525801	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7526917	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7527018	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7527074	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7528848	0.85[AMR][1000 genomes]
rs7528955	0.85[AMR][1000 genomes]
rs7531674	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7533479	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7533512	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7537396	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7542521	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7545150	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7549787	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7550955	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9730482	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9919230	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9919245	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003359	chr1:180300936-180727561	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	48 gene(s)	inside rSNPs	diseases
2	nsv949311	chr1:180438895-180692815	ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
3	nsv872578	chr1:180510771-180842344	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	esv2754432	chr1:180645343-180692343	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:180672400-180690000	Weak transcription	Left Ventricle	heart
2	chr1:180672600-180690000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:180672800-180679600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:180673000-180683400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr1:180678600-180679000	ZNF genes & repeats	K562	blood
6	chr1:180678800-180683000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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