The 2.0 version of rSNPBase

Variant report

Variant rs10399869
Chromosome Location chr1:180659139-180659140
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:27 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:180633200-180672000 Weak transcription K562 blood
2 chr1:180640200-180662200 Weak transcription Fetal Heart heart
3 chr1:180640600-180660600 Weak transcription Right Ventricle heart
4 chr1:180641200-180662800 Weak transcription Breast Myoepithelial Primary Cells Breast
5 chr1:180641600-180661200 Weak transcription Primary T regulatory cells fromperipheralblood blood
6 chr1:180644000-180660400 Weak transcription Primary T helper cells PMA-I stimulated --
7 chr1:180644000-180660800 Weak transcription Sigmoid Colon Sigmoid Colon
8 chr1:180644000-180662600 Weak transcription Left Ventricle heart
9 chr1:180644000-180663800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
10 chr1:180645200-180659400 Weak transcription A549 lung
11 chr1:180646400-180662200 Weak transcription iPS-20b Cell Line embryonic stem cell
12 chr1:180647400-180662600 Weak transcription iPS-15b Cell Line embryonic stem cell
13 chr1:180647600-180661200 Weak transcription Primary T helper naive cells fromperipheralblood blood
14 chr1:180648000-180663800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
15 chr1:180649000-180666200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
16 chr1:180649400-180660400 Weak transcription Osteobl bone
17 chr1:180650200-180665600 Weak transcription Primary T helper cells fromperipheralblood blood
18 chr1:180650200-180669800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
19 chr1:180650600-180659600 Weak transcription Colon Smooth Muscle Colon
20 chr1:180652000-180659400 Weak transcription Cortex derived primary cultured neurospheres brain
21 chr1:180652000-180660600 Weak transcription HUES64 Cell Line embryonic stem cell
22 chr1:180652000-180661000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
23 chr1:180652000-180672400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
24 chr1:180652200-180660600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
25 chr1:180656800-180659400 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
26 chr1:180658800-180659400 Weak transcription Pancreatic Islets Pancreatic Islet
27 chr1:180659000-180661800 Enhancers H9 Derived Neuron Cultured Cells ES cell derived

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Last update: Aug 31, 2015