The 2.0 version of rSNPBase

Variant report

Variant rs73049489
Chromosome Location chr1:180634657-180634658
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:51 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:180602000-180645200 Weak transcription Gastric stomach
2 chr1:180625800-180634800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
3 chr1:180627600-180640000 Weak transcription Fetal Heart heart
4 chr1:180629600-180641000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
5 chr1:180631200-180635000 Weak transcription HMEC breast
6 chr1:180631200-180636000 Weak transcription Ovary ovary
7 chr1:180631400-180635000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
8 chr1:180631600-180644400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
9 chr1:180631800-180635000 ZNF genes & repeats Fetal Brain Female brain
10 chr1:180632200-180635000 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
11 chr1:180632200-180635000 ZNF genes & repeats Cortex derived primary cultured neurospheres brain
12 chr1:180632200-180644800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
13 chr1:180632400-180634800 ZNF genes & repeats Primary T helper 17 cells PMA-I stimulated --
14 chr1:180632400-180634800 ZNF genes & repeats Fetal Intestine Small intestine
15 chr1:180632400-180634800 Strong transcription Pancreatic Islets Pancreatic Islet
16 chr1:180632400-180635000 ZNF genes & repeats Ganglion Eminence derived primary cultured neurospheres brain
17 chr1:180632400-180635400 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
18 chr1:180632400-180635400 ZNF genes & repeats Brain Germinal Matrix brain
19 chr1:180632600-180634800 ZNF genes & repeats H9 Derived Neuron Cultured Cells ES cell derived
20 chr1:180632600-180635000 ZNF genes & repeats Primary Natural Killer cells fromperipheralblood blood
21 chr1:180632800-180634800 ZNF genes & repeats Fetal Stomach stomach
22 chr1:180633000-180634800 ZNF genes & repeats Primary hematopoietic stem cells blood
23 chr1:180633000-180635200 Weak transcription Stomach Smooth Muscle stomach
24 chr1:180633000-180636000 Weak transcription Rectal Mucosa Donor 29 rectum
25 chr1:180633200-180635200 ZNF genes & repeats Foreskin Melanocyte Primary Cells skin03 Skin
26 chr1:180633200-180636200 Weak transcription Skeletal Muscle Male skeletal muscle
27 chr1:180633200-180672000 Weak transcription K562 blood
28 chr1:180633400-180635000 Weak transcription Primary T helper naive cells from peripheral blood blood
29 chr1:180633400-180642600 Weak transcription Pancreas Pancrea
30 chr1:180633600-180635000 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
31 chr1:180633600-180635200 ZNF genes & repeats Primary T helper cells fromperipheralblood blood
32 chr1:180633600-180635600 Strong transcription Primary B cells from cord blood blood
33 chr1:180633800-180635600 Weak transcription Fetal Intestine Large intestine
34 chr1:180633800-180640200 Weak transcription Right Ventricle heart
35 chr1:180634000-180635400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
36 chr1:180634000-180643400 Weak transcription Left Ventricle heart
37 chr1:180634200-180634800 ZNF genes & repeats Spleen Spleen
38 chr1:180634200-180635000 ZNF genes & repeats H1 Derived Mesenchymal Stem Cells ES cell derived
39 chr1:180634200-180635600 ZNF genes & repeats Primary T regulatory cells fromperipheralblood blood
40 chr1:180634200-180636200 ZNF genes & repeats Primary T cells from cord blood blood
41 chr1:180634400-180634800 ZNF genes & repeats IMR90 fetal lung fibroblasts Cell Line lung
42 chr1:180634400-180634800 ZNF genes & repeats Aorta Aorta
43 chr1:180634400-180634800 ZNF genes & repeats Fetal Muscle Leg muscle
44 chr1:180634400-180635000 ZNF genes & repeats Sigmoid Colon Sigmoid Colon
45 chr1:180634400-180635200 ZNF genes & repeats Breast Myoepithelial Primary Cells Breast
46 chr1:180634600-180634800 Enhancers H1 Cell Line embryonic stem cell
47 chr1:180634600-180634800 ZNF genes & repeats Primary B cells from peripheral blood blood
48 chr1:180634600-180634800 ZNF genes & repeats Lung lung
49 chr1:180634600-180635000 Enhancers ES-UCSF4 Cell Line embryonic stem cell
50 chr1:180634600-180635200 ZNF genes & repeats Dnd41 blood

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Last update: Aug 31, 2015