Variant report

Variant	rs73040173
Chromosome Location	chr2:183012436-183012437
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs59518934	1.00[AMR][1000 genomes]
rs59695429	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73040177	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73040182	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73040184	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73040186	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73040200	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73040201	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73041809	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73041876	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73041878	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73041884	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73041885	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73041890	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73041891	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73043805	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73043813	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73043815	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73043817	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73043821	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73046053	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73046055	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73046073	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73046074	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73046077	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73046083	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73046093	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73046097	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73047905	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73047929	1.00[AMR][1000 genomes]
rs73047932	1.00[AMR][1000 genomes]
rs73049877	1.00[AMR][1000 genomes]
rs73049880	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875477	chr2:182938377-183086478	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:182998600-183024000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr2:182999200-183016000	Weak transcription	Gastric	stomach
3	chr2:183002400-183013000	Weak transcription	Left Ventricle	heart
4	chr2:183009400-183018200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr2:183009600-183013200	Weak transcription	Osteobl	bone
6	chr2:183009800-183013000	Weak transcription	Aorta	Aorta
7	chr2:183009800-183013000	Weak transcription	Pancreas	Pancrea
8	chr2:183009800-183013000	Weak transcription	Right Atrium	heart
9	chr2:183010000-183013000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr2:183010000-183013000	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr2:183010000-183013000	Weak transcription	Hela-S3	cervix
12	chr2:183010000-183013000	Weak transcription	HSMM	muscle
13	chr2:183010000-183013000	Weak transcription	HSMMtube	muscle
14	chr2:183010000-183013000	Weak transcription	NH-A	brain
15	chr2:183010000-183013200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr2:183010200-183012800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr2:183010600-183013000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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