Variant report

Variant	rs73041878
Chromosome Location	chr2:183047949-183047950
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:182943683..182945595-chr2:183046138..183048424,2	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs59518934	1.00[AMR][1000 genomes]
rs59695429	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73040173	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73040177	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73040182	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73040184	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73040186	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73040200	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73040201	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73041809	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73041876	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73041884	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73041885	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73041890	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73041891	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73043805	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73043813	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73043815	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73043817	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73043821	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73043827	0.90[AFR][1000 genomes]
rs73046053	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73046055	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73046073	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73046074	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73046077	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73046083	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73046093	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73046097	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73047905	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73047929	1.00[AMR][1000 genomes]
rs73047932	1.00[AMR][1000 genomes]
rs73049877	1.00[AMR][1000 genomes]
rs73049880	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875477	chr2:182938377-183086478	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv583913	chr2:183043563-183243313	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:183013600-183048000	Weak transcription	Aorta	Aorta
2	chr2:183019400-183048200	Weak transcription	Left Ventricle	heart
3	chr2:183033400-183048000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr2:183041600-183048000	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr2:183044200-183048200	Weak transcription	Fetal Intestine Large	intestine
6	chr2:183046000-183048400	Strong transcription	Fetal Stomach	stomach
7	chr2:183047000-183048000	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr2:183047200-183049800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr2:183047400-183048400	ZNF genes & repeats	Fetal Brain Female	brain
10	chr2:183047600-183048000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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