Variant report

Variant	rs73040177
Chromosome Location	chr2:183013187-183013188
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs59518934	1.00[AMR][1000 genomes]
rs59695429	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73040173	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73040182	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73040184	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73040186	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73040200	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73040201	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73041809	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73041876	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73041878	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73041884	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73041885	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73041890	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73041891	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73043805	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73043813	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73043815	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73043817	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73043821	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73046053	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73046055	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73046073	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73046074	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73046077	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73046083	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73046093	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73046097	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73047905	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73047929	1.00[AMR][1000 genomes]
rs73047932	1.00[AMR][1000 genomes]
rs73049877	1.00[AMR][1000 genomes]
rs73049880	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875477	chr2:182938377-183086478	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:182998600-183024000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr2:182999200-183016000	Weak transcription	Gastric	stomach
3	chr2:183009400-183018200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr2:183009600-183013200	Weak transcription	Osteobl	bone
5	chr2:183010000-183013200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr2:183012800-183013600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr2:183013000-183013200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr2:183013000-183013400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr2:183013000-183013400	Enhancers	Left Ventricle	heart
10	chr2:183013000-183013400	Enhancers	HSMM	muscle
11	chr2:183013000-183013400	Enhancers	NH-A	brain
12	chr2:183013000-183013600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr2:183013000-183013600	Enhancers	Muscle Satellite Cultured Cells	--
14	chr2:183013000-183013600	Enhancers	Aorta	Aorta
15	chr2:183013000-183013600	Enhancers	Pancreas	Pancrea
16	chr2:183013000-183013600	Enhancers	Right Atrium	heart
17	chr2:183013000-183013600	Enhancers	Right Ventricle	heart
18	chr2:183013000-183013600	Enhancers	Hela-S3	cervix
19	chr2:183013000-183013600	Enhancers	HSMMtube	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links