Variant report

Variant	rs73049877
Chromosome Location	chr2:183121585-183121586
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs56787177	1.00[AFR][1000 genomes]
rs59518934	1.00[AMR][1000 genomes]
rs59695429	1.00[AMR][1000 genomes]
rs59800557	0.83[AFR][1000 genomes]
rs60833287	0.87[AFR][1000 genomes]
rs61033495	0.87[AFR][1000 genomes]
rs73032412	0.83[AFR][1000 genomes]
rs73032416	0.87[AFR][1000 genomes]
rs73032436	0.95[AFR][1000 genomes]
rs73032439	0.83[AFR][1000 genomes]
rs73032441	0.83[AFR][1000 genomes]
rs73032443	0.87[AFR][1000 genomes]
rs73032447	1.00[AFR][1000 genomes]
rs73032448	1.00[AFR][1000 genomes]
rs73036226	1.00[AFR][1000 genomes]
rs73036241	0.87[AFR][1000 genomes]
rs73036249	0.87[AFR][1000 genomes]
rs73036251	1.00[AFR][1000 genomes]
rs73036260	0.83[AFR][1000 genomes]
rs73040173	1.00[AMR][1000 genomes]
rs73040177	1.00[AMR][1000 genomes]
rs73040182	1.00[AMR][1000 genomes]
rs73040184	1.00[AMR][1000 genomes]
rs73040186	1.00[AMR][1000 genomes]
rs73040200	1.00[AMR][1000 genomes]
rs73040201	1.00[AMR][1000 genomes]
rs73041809	1.00[AMR][1000 genomes]
rs73041876	1.00[AMR][1000 genomes]
rs73041878	1.00[AMR][1000 genomes]
rs73041884	1.00[AMR][1000 genomes]
rs73041885	1.00[AMR][1000 genomes]
rs73041890	1.00[AMR][1000 genomes]
rs73041891	1.00[AMR][1000 genomes]
rs73043805	1.00[AMR][1000 genomes]
rs73043813	1.00[AMR][1000 genomes]
rs73043815	1.00[AMR][1000 genomes]
rs73043817	1.00[AMR][1000 genomes]
rs73043821	1.00[AMR][1000 genomes]
rs73046053	1.00[AMR][1000 genomes]
rs73046055	1.00[AMR][1000 genomes]
rs73046073	1.00[AMR][1000 genomes]
rs73046074	1.00[AMR][1000 genomes]
rs73046077	1.00[AMR][1000 genomes]
rs73046083	1.00[AMR][1000 genomes]
rs73046093	1.00[AMR][1000 genomes]
rs73046097	1.00[AMR][1000 genomes]
rs73047905	1.00[AMR][1000 genomes]
rs73047929	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73047932	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73049880	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583913	chr2:183043563-183243313	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv533782	chr2:183059730-183500040	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1008825	chr2:183067339-183228668	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv536066	chr2:183067339-183228668	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:183106400-183138400	Weak transcription	Aorta	Aorta
2	chr2:183113600-183138800	Weak transcription	Fetal Stomach	stomach
3	chr2:183113800-183124200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr2:183114400-183124200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr2:183119600-183123600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links