Variant report

Variant	rs73043821
Chromosome Location	chr2:183077130-183077131
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs59518934	1.00[AMR][1000 genomes]
rs59695429	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73040173	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73040177	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73040182	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73040184	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73040186	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73040200	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73040201	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73041809	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73041876	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73041878	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73041884	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73041885	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73041890	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73041891	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73043805	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73043813	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73043815	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73043817	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73043827	0.90[AFR][1000 genomes]
rs73046053	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73046055	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73046073	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73046074	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73046077	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73046083	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73046093	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73046097	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73047905	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73047929	1.00[AMR][1000 genomes]
rs73047932	1.00[AMR][1000 genomes]
rs73049877	1.00[AMR][1000 genomes]
rs73049880	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875477	chr2:182938377-183086478	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv583913	chr2:183043563-183243313	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv533782	chr2:183059730-183500040	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1008825	chr2:183067339-183228668	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv536066	chr2:183067339-183228668	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv1807941	chr2:183068844-183091601	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
7	esv1814932	chr2:183068844-183091601	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:183061000-183085000	Weak transcription	Brain Cingulate Gyrus	brain
2	chr2:183065800-183087600	Weak transcription	Aorta	Aorta
3	chr2:183065800-183087600	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr2:183067000-183084000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr2:183071600-183086800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr2:183076200-183083600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr2:183076800-183083200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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