Variant report

Variant	rs73128327
Chromosome Location	chr3:82035154-82035155
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:56)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:56 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr3:82035050-82035367	K562	blood:	n/a	n/a
2	RAD21	chr3:82035018-82035414	HepG2	liver:	n/a	n/a
3	MYBL2	chr3:82035077-82035570	HepG2	liver:	n/a	n/a
4	GABPA	chr3:82035091-82035370	K562	blood:	n/a	n/a
5	RAD21	chr3:82035036-82035460	H1-hESC	embryonic stem cell:	n/a	n/a
6	MAFK	chr3:82035074-82035212	K562	blood:	n/a	n/a
7	POLR2A	chr3:82035036-82035531	HCT-116	colon:	n/a	n/a
8	CTCF	chr3:82035140-82035290	BE2_C	brain:	n/a	n/a
9	HEY1	chr3:82035070-82035589	HepG2	liver:	n/a	n/a
10	CTCF	chr3:82035120-82035270	WERI-Rb-1	eye:	n/a	n/a
11	ARID3A	chr3:82035096-82035370	HepG2	liver:	n/a	n/a
12	CTCF	chr3:82035120-82035270	HEK293	kidney:	n/a	n/a
13	ZNF143	chr3:82035138-82035361	H1-hESC	embryonic stem cell:	n/a	n/a
14	SMC3	chr3:82035045-82035603	HepG2	liver:	n/a	n/a
15	RAD21	chr3:82035031-82035383	H1-hESC	embryonic stem cell:	n/a	n/a
16	CTCF	chr3:82035100-82035250	K562	blood:	n/a	n/a
17	RAD21	chr3:82035034-82035382	H1-hESC	embryonic stem cell:	n/a	n/a
18	HDAC2	chr3:82035059-82035293	HepG2	liver:	n/a	n/a
19	CTCF	chr3:82035100-82035250	HCT-116	colon:	n/a	n/a
20	CTCF	chr3:82035135-82035302	H1-hESC	embryonic stem cell:	n/a	n/a
21	CTCF	chr3:82035080-82035230	MCF-7	breast:	n/a	n/a
22	POLR2A	chr3:82035107-82036060	HepG2	liver:	n/a	n/a
23	NFIC	chr3:82035033-82035368	HepG2	liver:	n/a	n/a
24	CBX3	chr3:82035076-82035563	HCT-116	colon:	n/a	n/a
25	CTCF	chr3:82035049-82035343	H1-hESC	embryonic stem cell:	n/a	n/a
26	CTCF	chr3:82035120-82035270	GM12873	blood:	n/a	n/a
27	CTCF	chr3:82035120-82035270	A549	lung:	n/a	n/a
28	YY1	chr3:82035102-82035277	HCT-116	colon:	n/a	n/a
29	RAD21	chr3:82035083-82035284	HepG2	liver:	n/a	n/a
30	CTCF	chr3:82035070-82035366	HepG2	liver:	n/a	n/a
31	POLR2A	chr3:82035047-82035489	HCT-116	colon:	n/a	n/a
32	MYBL2	chr3:82034996-82035490	HepG2	liver:	n/a	n/a
33	ELF1	chr3:82035102-82035406	K562	blood:	n/a	n/a
34	CHD2	chr3:82035150-82035359	HepG2	liver:	n/a	n/a
35	POLR2A	chr3:82035114-82035520	K562	blood:	n/a	n/a
36	RFX5	chr3:82035153-82035510	HepG2	liver:	n/a	n/a
37	CTCF	chr3:82035134-82035302	HepG2	liver:	n/a	n/a
38	RAD21	chr3:82035047-82035427	HepG2	liver:	n/a	n/a
39	CTCF	chr3:82035140-82035290	K562	blood:	n/a	n/a
40	ZBTB7A	chr3:82035071-82035303	HepG2	liver:	n/a	n/a
41	CTCF	chr3:82035148-82035287	K562	blood:	n/a	n/a
42	CTCF	chr3:82035120-82035270	HCT-116	colon:	n/a	n/a
43	GABPA	chr3:82035132-82035399	HepG2	liver:	n/a	n/a
44	MAFK	chr3:82035107-82035353	HepG2	liver:	n/a	n/a
45	ELF1	chr3:82035111-82035461	HepG2	liver:	n/a	n/a
46	ZBTB7A	chr3:82035077-82035310	HepG2	liver:	n/a	n/a
47	CTCF	chr3:82035080-82035230	HVMF	connective:	n/a	n/a
48	GABPA	chr3:82035124-82035407	HepG2	liver:	n/a	n/a
49	ELF1	chr3:82035047-82035474	HepG2	liver:	n/a	n/a
50	CTCF	chr3:82035140-82035290	HepG2	liver:	n/a	n/a

No data

Variant related genes	Relation type
ENSG00000239440	TF binding region

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12632087	1.00[AMR][1000 genomes]
rs6778193	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6778648	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73128312	1.00[ASN][1000 genomes]
rs73128314	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73128319	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73128324	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73128325	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73128329	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73128344	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73128348	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73128350	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73128352	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73130394	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73132331	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73133711	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73133730	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73133743	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73135722	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73135762	1.00[AMR][1000 genomes]
rs73136194	1.00[AMR][1000 genomes]
rs73136200	1.00[AMR][1000 genomes]
rs7635749	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7643979	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9872306	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752870	chr3:82014410-82050310	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:82031000-82038200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr3:82035000-82037400	Active TSS	HepG2	liver

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