Variant report

Variant	rs73133730
Chromosome Location	chr3:82150211-82150212
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs12632087	1.00[AMR][1000 genomes]
rs6778193	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6778648	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6781784	1.00[AMR][1000 genomes]
rs73128312	1.00[ASN][1000 genomes]
rs73128314	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73128319	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73128324	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73128325	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73128327	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73128329	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73128344	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73128348	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73128350	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73128352	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73130394	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73132331	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73133711	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73133743	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73135722	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73135762	1.00[AMR][1000 genomes]
rs73136194	1.00[AMR][1000 genomes]
rs73136200	1.00[AMR][1000 genomes]
rs73138120	1.00[AMR][1000 genomes]
rs73138123	1.00[AMR][1000 genomes]
rs73138125	1.00[AMR][1000 genomes]
rs73138134	1.00[AMR][1000 genomes]
rs73138138	1.00[AMR][1000 genomes]
rs73138148	1.00[AMR][1000 genomes]
rs73140170	1.00[AMR][1000 genomes]
rs73140171	1.00[AMR][1000 genomes]
rs7635749	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7643979	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9872306	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007167	chr3:82050178-82301466	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv877041	chr3:82074024-82363196	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1008429	chr3:82089650-82510536	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv432460	chr3:82107110-82508010	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:82149000-82150400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:82149200-82150400	Enhancers	NHEK	skin
3	chr3:82149400-82150600	Enhancers	HMEC	breast
4	chr3:82149400-82151000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr3:82149400-82151400	Enhancers	HSMMtube	muscle
6	chr3:82149600-82150400	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr3:82149600-82150600	Enhancers	NH-A	brain
8	chr3:82149600-82150800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr3:82149600-82151200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links