Variant report

Variant	rs73133711
Chromosome Location	chr3:82130453-82130454
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs12632087	1.00[AMR][1000 genomes]
rs6778193	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6778648	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6781784	1.00[AMR][1000 genomes]
rs73128312	1.00[ASN][1000 genomes]
rs73128314	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73128319	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73128324	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73128325	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73128327	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73128329	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73128344	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73128348	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73128350	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73128352	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73130394	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73132331	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73133730	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73133743	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73135722	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73135762	1.00[AMR][1000 genomes]
rs73136194	1.00[AMR][1000 genomes]
rs73136200	1.00[AMR][1000 genomes]
rs73138120	1.00[AMR][1000 genomes]
rs73138123	1.00[AMR][1000 genomes]
rs73138125	1.00[AMR][1000 genomes]
rs73138134	1.00[AMR][1000 genomes]
rs73138138	1.00[AMR][1000 genomes]
rs73138148	1.00[AMR][1000 genomes]
rs73140170	1.00[AMR][1000 genomes]
rs73140171	1.00[AMR][1000 genomes]
rs7635749	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7643979	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9872306	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007167	chr3:82050178-82301466	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv877041	chr3:82074024-82363196	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1008429	chr3:82089650-82510536	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv432460	chr3:82107110-82508010	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:82128000-82130600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr3:82128000-82131200	Enhancers	HUVEC	blood vessel
3	chr3:82129400-82130600	Enhancers	NH-A	brain
4	chr3:82129400-82130800	Enhancers	NHEK	skin
5	chr3:82129400-82131000	Enhancers	Muscle Satellite Cultured Cells	--
6	chr3:82129400-82131200	Enhancers	HMEC	breast
7	chr3:82129400-82132400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr3:82129600-82130800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr3:82129800-82130600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr3:82129800-82130800	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr3:82130000-82130800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr3:82130000-82130800	Enhancers	HSMM	muscle
13	chr3:82130000-82132000	Weak transcription	Primary B cells from cord blood	blood
14	chr3:82130000-82133200	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr3:82130200-82130600	Enhancers	Osteobl	bone
16	chr3:82130200-82130800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr3:82130200-82132800	Enhancers	Dnd41	blood
18	chr3:82130200-82133400	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr3:82130200-82133600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr3:82130200-82133600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr3:82130200-82133600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr3:82130200-82134000	Weak transcription	Brain Hippocampus Middle	brain
23	chr3:82130200-82134400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr3:82130200-82134600	Weak transcription	HSMMtube	muscle
25	chr3:82130400-82131000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr3:82130400-82133000	Weak transcription	Cortex derived primary cultured neurospheres	brain

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