Variant report

Variant	rs73135722
Chromosome Location	chr3:82205325-82205326
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs12632087	1.00[AMR][1000 genomes]
rs6778193	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6778648	1.00[ASN][1000 genomes]
rs6781784	1.00[AMR][1000 genomes]
rs73128312	1.00[ASN][1000 genomes]
rs73128314	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73128319	1.00[ASN][1000 genomes]
rs73128324	1.00[ASN][1000 genomes]
rs73128325	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73128327	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73128329	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73128344	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73128348	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73128350	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73128352	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73130394	1.00[ASN][1000 genomes]
rs73132331	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73133711	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73133730	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73133743	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73135762	1.00[AMR][1000 genomes]
rs73136194	1.00[AMR][1000 genomes]
rs73136200	1.00[AMR][1000 genomes]
rs73138120	1.00[AMR][1000 genomes]
rs73138123	1.00[AMR][1000 genomes]
rs73138125	1.00[AMR][1000 genomes]
rs73138134	1.00[AMR][1000 genomes]
rs73138138	1.00[AMR][1000 genomes]
rs73138148	1.00[AMR][1000 genomes]
rs73140170	1.00[AMR][1000 genomes]
rs73140171	1.00[AMR][1000 genomes]
rs7635749	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7643979	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9872306	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007167	chr3:82050178-82301466	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv877041	chr3:82074024-82363196	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1008429	chr3:82089650-82510536	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv432460	chr3:82107110-82508010	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1005262	chr3:82165228-82258781	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1013820	chr3:82175705-82968181	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv877043	chr3:82198467-82311711	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS	lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv590779	chr3:82203354-82223946	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:82205000-82209600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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