Variant report

Variant	rs73128348
Chromosome Location	chr3:82048229-82048230
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs12632087	0.83[AMR][1000 genomes]
rs6778193	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6778648	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73128312	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73128314	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73128319	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73128324	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73128325	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73128327	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73128329	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73128344	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73128350	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73128352	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73130394	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73132331	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73133711	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73133730	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73133743	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73135722	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73135762	0.83[AMR][1000 genomes]
rs73136194	0.83[AMR][1000 genomes]
rs73136200	0.83[AMR][1000 genomes]
rs73138120	0.83[AMR][1000 genomes]
rs73138123	0.83[AMR][1000 genomes]
rs73138125	0.83[AMR][1000 genomes]
rs73138134	0.83[AMR][1000 genomes]
rs7635749	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7643979	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9872306	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752870	chr3:82014410-82050310	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:82044200-82049800	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr3:82046200-82053800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr3:82046600-82049600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr3:82047000-82048400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr3:82047000-82048400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr3:82047000-82048800	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr3:82047200-82052800	Enhancers	Brain Germinal Matrix	brain
8	chr3:82047600-82049600	Weak transcription	Fetal Muscle Leg	muscle
9	chr3:82047600-82050600	Weak transcription	HSMMtube	muscle
10	chr3:82047800-82049600	Weak transcription	Fetal Brain Male	brain
11	chr3:82047800-82050000	Weak transcription	Fetal Brain Female	brain
12	chr3:82048200-82049600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr3:82048200-82049800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr3:82048200-82051600	Weak transcription	Fetal Heart	heart

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