Variant report

Variant	rs73170526
Chromosome Location	chr3:159672159-159672160
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs13325119	1.00[EUR][1000 genomes]
rs1366303	0.97[EUR][1000 genomes]
rs1389817	1.00[EUR][1000 genomes]
rs28397084	1.00[EUR][1000 genomes]
rs73170508	1.00[EUR][1000 genomes]
rs73170509	1.00[EUR][1000 genomes]
rs73170513	0.98[EUR][1000 genomes]
rs73170516	1.00[EUR][1000 genomes]
rs9814871	1.00[EUR][1000 genomes]
rs9817922	1.00[EUR][1000 genomes]
rs9818736	1.00[EUR][1000 genomes]
rs9818907	1.00[EUR][1000 genomes]
rs9824156	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829769	chr3:159606913-159805282	Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159658600-159672200	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr3:159669000-159672600	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr3:159670400-159672600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr3:159670600-159672600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr3:159670600-159672600	Enhancers	Brain Germinal Matrix	brain
6	chr3:159671800-159672200	Enhancers	Monocytes-CD14+_RO01746	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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