Variant report

Variant	rs9814871
Chromosome Location	chr3:159655667-159655668
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:159646129..159648856-chr3:159654448..159656176,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs13324055	1.00[ASN][1000 genomes]
rs13324085	1.00[ASN][1000 genomes]
rs13325119	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1366303	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1389817	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2126143	1.00[YRI][hapmap]
rs28397084	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28726382	1.00[ASN][1000 genomes]
rs2886623	1.00[LWK][hapmap];1.00[YRI][hapmap]
rs73170508	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73170509	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73170513	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73170516	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73170526	1.00[EUR][1000 genomes]
rs9812520	1.00[YRI][hapmap]
rs9817922	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9818736	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9818907	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9824156	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9831512	1.00[ASN][1000 genomes]
rs9872563	1.00[ASN][1000 genomes]
rs9873580	1.00[ASN][1000 genomes]
rs9883824	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997776	chr3:159585097-159668421	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv829769	chr3:159606913-159805282	Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv4086	chr3:159612521-159657780	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159652400-159658400	Weak transcription	Brain Cingulate Gyrus	brain
2	chr3:159653200-159657200	Enhancers	Muscle Satellite Cultured Cells	--
3	chr3:159653800-159656800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr3:159654000-159657200	Enhancers	Osteobl	bone
5	chr3:159654200-159656600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr3:159654400-159656600	Weak transcription	NHLF	lung
7	chr3:159654400-159664400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr3:159654600-159658800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr3:159654600-159659000	Weak transcription	NH-A	brain
10	chr3:159654600-159664800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr3:159654600-159665200	Weak transcription	HSMM	muscle
12	chr3:159654800-159655800	Weak transcription	NHDF-Ad	bronchial
13	chr3:159655200-159656000	Enhancers	Colon Smooth Muscle	Colon
14	chr3:159655200-159656400	Enhancers	Rectal Smooth Muscle	rectum
15	chr3:159655200-159656800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr3:159655200-159658200	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr3:159655400-159655800	Enhancers	Brain Angular Gyrus	brain
18	chr3:159655400-159655800	Enhancers	Brain Substantia Nigra	brain
19	chr3:159655400-159656000	Enhancers	Brain Hippocampus Middle	brain
20	chr3:159655400-159657000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr3:159655600-159656000	Enhancers	Brain Inferior Temporal Lobe	brain
22	chr3:159655600-159657200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr3:159655600-159657800	Enhancers	Monocytes-CD14+_RO01746	blood

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