Variant report

Variant	rs13324085
Chromosome Location	chr3:159627623-159627624
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs13324055	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13325119	1.00[ASN][1000 genomes]
rs1366303	1.00[ASN][1000 genomes]
rs1389817	1.00[ASN][1000 genomes]
rs28397084	1.00[ASN][1000 genomes]
rs28726382	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73170508	1.00[ASN][1000 genomes]
rs73170509	1.00[ASN][1000 genomes]
rs73170513	1.00[ASN][1000 genomes]
rs73170516	1.00[ASN][1000 genomes]
rs9814871	1.00[ASN][1000 genomes]
rs9817922	1.00[ASN][1000 genomes]
rs9818736	1.00[ASN][1000 genomes]
rs9818907	1.00[ASN][1000 genomes]
rs9824156	1.00[ASN][1000 genomes]
rs9831512	1.00[ASN][1000 genomes]
rs9872563	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9873580	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9883824	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877698	chr3:159583518-159640152	Genic enhancers Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv997776	chr3:159585097-159668421	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv829769	chr3:159606913-159805282	Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	esv3584505	chr3:159606945-159648615	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv4086	chr3:159612521-159657780	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159612400-159628800	Weak transcription	Stomach Smooth Muscle	stomach
2	chr3:159613400-159628600	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr3:159615400-159629000	Weak transcription	Small Intestine	intestine
4	chr3:159615800-159628600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr3:159616200-159628200	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr3:159616400-159628000	Weak transcription	NHLF	lung
7	chr3:159616400-159628400	Weak transcription	Osteobl	bone
8	chr3:159616400-159628800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr3:159616800-159628800	Weak transcription	HSMMtube	muscle
10	chr3:159617000-159629000	Weak transcription	Left Ventricle	heart
11	chr3:159617000-159645000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr3:159617200-159628600	Weak transcription	Aorta	Aorta
13	chr3:159617400-159628800	Weak transcription	HMEC	breast
14	chr3:159617400-159631400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr3:159619200-159628000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr3:159621000-159628400	Weak transcription	Liver	Liver
17	chr3:159621000-159628800	Weak transcription	HSMM	muscle
18	chr3:159621200-159631600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr3:159622800-159628200	Weak transcription	NHDF-Ad	bronchial
20	chr3:159622800-159628600	Weak transcription	Colon Smooth Muscle	Colon
21	chr3:159623000-159628200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr3:159623200-159628200	Weak transcription	Brain Anterior Caudate	brain
23	chr3:159623200-159628200	Weak transcription	Brain Hippocampus Middle	brain
24	chr3:159623200-159628200	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr3:159626000-159628400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr3:159626200-159628600	Weak transcription	GM12878-XiMat	blood
27	chr3:159626400-159629000	Weak transcription	Primary hematopoietic stem cells	blood
28	chr3:159626800-159628400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr3:159626800-159628600	Weak transcription	Primary monocytes fromperipheralblood	blood
30	chr3:159626800-159628600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr3:159626800-159628600	Weak transcription	Monocytes-CD14+_RO01746	blood
32	chr3:159626800-159628800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr3:159627600-159629800	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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