The 2.0 version of rSNPBase

Variant report

Variant rs9883824
Chromosome Location chr3:159621942-159621943
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:44 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:159610600-159622800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr3:159612400-159628800 Weak transcription Stomach Smooth Muscle stomach
3 chr3:159613400-159628600 Weak transcription Skeletal Muscle Male skeletal muscle
4 chr3:159615400-159629000 Weak transcription Small Intestine intestine
5 chr3:159615800-159628600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
6 chr3:159616200-159622200 Weak transcription Primary hematopoietic stem cells blood
7 chr3:159616200-159622400 Weak transcription Colon Smooth Muscle Colon
8 chr3:159616200-159628200 Weak transcription Duodenum Smooth Muscle Duodenum
9 chr3:159616400-159622400 Weak transcription HUVEC blood vessel
10 chr3:159616400-159628000 Weak transcription NHLF lung
11 chr3:159616400-159628400 Weak transcription Osteobl bone
12 chr3:159616400-159628800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
13 chr3:159616800-159622600 Weak transcription Fetal Brain Female brain
14 chr3:159616800-159628800 Weak transcription HSMMtube muscle
15 chr3:159617000-159629000 Weak transcription Left Ventricle heart
16 chr3:159617000-159645000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
17 chr3:159617200-159628600 Weak transcription Aorta Aorta
18 chr3:159617400-159622800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
19 chr3:159617400-159628800 Weak transcription HMEC breast
20 chr3:159617400-159631400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
21 chr3:159619200-159628000 Weak transcription Breast Myoepithelial Primary Cells Breast
22 chr3:159620000-159622600 Enhancers Brain Angular Gyrus brain
23 chr3:159620000-159623200 Enhancers Brain Substantia Nigra brain
24 chr3:159620200-159622200 Enhancers Brain Inferior Temporal Lobe brain
25 chr3:159620200-159622200 Enhancers Monocytes-CD14+_RO01746 blood
26 chr3:159620200-159623400 Enhancers Primary monocytes fromperipheralblood blood
27 chr3:159620200-159623400 Enhancers Primary hematopoietic stem cells short term culture blood
28 chr3:159620200-159623400 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
29 chr3:159620400-159623200 Enhancers Brain Anterior Caudate brain
30 chr3:159620600-159622800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
31 chr3:159620800-159622200 Weak transcription NHDF-Ad bronchial
32 chr3:159620800-159622600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
33 chr3:159621000-159622200 Weak transcription Primary B cells from peripheral blood blood
34 chr3:159621000-159622200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
35 chr3:159621000-159622200 Enhancers GM12878-XiMat blood
36 chr3:159621000-159622600 Weak transcription Spleen Spleen
37 chr3:159621000-159622800 Weak transcription Cortex derived primary cultured neurospheres brain
38 chr3:159621000-159628400 Weak transcription Liver Liver
39 chr3:159621000-159628800 Weak transcription HSMM muscle
40 chr3:159621200-159622200 Weak transcription Brain Hippocampus Middle brain
41 chr3:159621200-159631600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
42 chr3:159621600-159622000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
43 chr3:159621600-159623000 Enhancers Primary B cells from cord blood blood
44 chr3:159621800-159622200 Weak transcription Brain Cingulate Gyrus brain

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Last update: Aug 31, 2015