Variant report

Variant	rs73170513
Chromosome Location	chr3:159659857-159659858
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:159659483..159661932-chr3:159706578..159709466,2	MCF-7	breast:
2	chr3:159645783..159648230-chr3:159658331..159660835,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168811	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs13324055	1.00[ASN][1000 genomes]
rs13324085	1.00[ASN][1000 genomes]
rs13325119	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1366303	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1389817	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28397084	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28726382	1.00[ASN][1000 genomes]
rs73170508	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73170509	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73170516	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73170526	0.98[EUR][1000 genomes]
rs9814871	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9817922	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9818736	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9818907	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9824156	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9831512	1.00[ASN][1000 genomes]
rs9872563	1.00[ASN][1000 genomes]
rs9873580	1.00[ASN][1000 genomes]
rs9883824	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997776	chr3:159585097-159668421	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv829769	chr3:159606913-159805282	Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159654400-159664400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr3:159654600-159664800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr3:159654600-159665200	Weak transcription	HSMM	muscle
4	chr3:159656800-159664400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr3:159658600-159672200	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr3:159658800-159660000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr3:159658800-159660600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr3:159658800-159660600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr3:159659000-159660000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr3:159659000-159660000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr3:159659000-159660000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr3:159659000-159660000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr3:159659000-159660000	Enhancers	GM12878-XiMat	blood
14	chr3:159659000-159660000	Enhancers	NHDF-Ad	bronchial
15	chr3:159659000-159660000	Enhancers	NHEK	skin
16	chr3:159659000-159660000	Enhancers	Osteobl	bone
17	chr3:159659000-159660200	Enhancers	Muscle Satellite Cultured Cells	--
18	chr3:159659000-159660200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
19	chr3:159659000-159660400	Enhancers	Primary hematopoietic stem cells	blood
20	chr3:159659000-159660600	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr3:159659000-159660600	Enhancers	NHLF	lung
22	chr3:159659800-159664800	Weak transcription	NH-A	brain

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