Variant report

Variant	rs28397084
Chromosome Location	chr3:159645543-159645544
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs13324055	1.00[ASN][1000 genomes]
rs13324085	1.00[ASN][1000 genomes]
rs13325119	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1366303	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1389817	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28726382	1.00[ASN][1000 genomes]
rs73170508	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73170509	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73170513	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73170516	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73170526	1.00[EUR][1000 genomes]
rs9814871	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9817922	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9818736	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9818907	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9824156	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9831512	1.00[ASN][1000 genomes]
rs9872563	1.00[ASN][1000 genomes]
rs9873580	1.00[ASN][1000 genomes]
rs9883824	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997776	chr3:159585097-159668421	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv829769	chr3:159606913-159805282	Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	esv3584505	chr3:159606945-159648615	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv4086	chr3:159612521-159657780	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159629800-159646400	Weak transcription	Aorta	Aorta
2	chr3:159641200-159645600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr3:159641400-159646000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr3:159641400-159646200	Weak transcription	Primary B cells from cord blood	blood
5	chr3:159641600-159645600	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr3:159642400-159645600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr3:159642400-159647000	Weak transcription	Primary B cells from peripheral blood	blood
8	chr3:159643200-159645800	Weak transcription	GM12878-XiMat	blood
9	chr3:159643200-159647000	Weak transcription	Fetal Muscle Leg	muscle
10	chr3:159644200-159646800	Enhancers	HSMM	muscle
11	chr3:159644600-159646000	Enhancers	Muscle Satellite Cultured Cells	--
12	chr3:159644600-159648000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr3:159644800-159646000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr3:159644800-159648000	Enhancers	NHDF-Ad	bronchial
15	chr3:159644800-159648000	Enhancers	NHLF	lung
16	chr3:159645000-159646600	Enhancers	Rectal Mucosa Donor 31	rectum
17	chr3:159645000-159646800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr3:159645000-159646800	Enhancers	Osteobl	bone
19	chr3:159645000-159647800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr3:159645000-159648200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr3:159645000-159648600	Enhancers	Primary monocytes fromperipheralblood	blood
22	chr3:159645200-159646200	Enhancers	Monocytes-CD14+_RO01746	blood
23	chr3:159645200-159647800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr3:159645200-159648000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr3:159645200-159648000	Enhancers	HMEC	breast
26	chr3:159645200-159648000	Enhancers	HSMMtube	muscle
27	chr3:159645400-159645600	Enhancers	Right Atrium	heart
28	chr3:159645400-159645800	Enhancers	Fetal Muscle Trunk	muscle
29	chr3:159645400-159646800	Enhancers	Stomach Smooth Muscle	stomach
30	chr3:159645400-159647000	Enhancers	NH-A	brain
31	chr3:159645400-159647400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr3:159645400-159647800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr3:159645400-159647800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr3:159645400-159647800	Enhancers	NHEK	skin
35	chr3:159645400-159648000	Enhancers	Placenta	Placenta
36	chr3:159645400-159648200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr3:159645400-159648600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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