Variant report

Variant	rs9817922
Chromosome Location	chr3:159638218-159638219
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:159636755..159638986-chr3:159669596..159672189,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs13324055	1.00[ASN][1000 genomes]
rs13324085	1.00[ASN][1000 genomes]
rs13325119	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1366303	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1389817	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2126143	1.00[YRI][hapmap]
rs28397084	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28726382	1.00[ASN][1000 genomes]
rs2886623	1.00[LWK][hapmap];1.00[YRI][hapmap]
rs73170508	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73170509	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73170513	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73170516	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73170526	1.00[EUR][1000 genomes]
rs9812520	1.00[YRI][hapmap]
rs9814871	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9818736	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9818907	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9824156	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9831512	1.00[ASN][1000 genomes]
rs9872563	1.00[ASN][1000 genomes]
rs9873580	1.00[ASN][1000 genomes]
rs9883824	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877698	chr3:159583518-159640152	Genic enhancers Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv997776	chr3:159585097-159668421	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv829769	chr3:159606913-159805282	Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	esv3584505	chr3:159606945-159648615	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv4086	chr3:159612521-159657780	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159617000-159645000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr3:159629800-159644200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:159629800-159646400	Weak transcription	Aorta	Aorta
4	chr3:159632400-159641800	Weak transcription	HSMMtube	muscle
5	chr3:159632400-159644800	Weak transcription	Stomach Smooth Muscle	stomach
6	chr3:159632600-159645400	Weak transcription	NH-A	brain
7	chr3:159632800-159640800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr3:159632800-159645400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr3:159636400-159640200	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr3:159636400-159643000	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr3:159637000-159638400	Enhancers	Muscle Satellite Cultured Cells	--
12	chr3:159637200-159638600	Flanking Active TSS	GM12878-XiMat	blood
13	chr3:159637200-159644800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr3:159637800-159640000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr3:159638000-159638600	Enhancers	HSMM	muscle
16	chr3:159638200-159638800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr3:159638200-159639800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr3:159638200-159640200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr3:159638200-159641600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr3:159638200-159641800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr3:159638200-159644800	Weak transcription	NHDF-Ad	bronchial

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