Variant report

Variant	rs73207716
Chromosome Location	chr3:133048819-133048820
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11706381	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11707893	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11709476	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11709601	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11714849	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11717365	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11718154	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11720904	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34111099	0.82[EUR][1000 genomes]
rs73207710	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73207711	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73207719	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73207744	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73207746	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73207749	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73209818	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73209820	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73209824	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73209829	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73209837	0.87[EUR][1000 genomes]
rs73209843	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73209853	0.83[AMR][1000 genomes]
rs73217520	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73217532	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73217540	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73217543	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73217553	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73217560	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73221144	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73221166	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73221167	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73221180	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73221182	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73221187	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73222854	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877503	chr3:133035774-133104631	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133045600-133049200	Enhancers	Fetal Lung	lung
2	chr3:133046800-133049000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:133046800-133049400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr3:133046800-133049600	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr3:133047200-133049200	Enhancers	Fetal Brain Female	brain
6	chr3:133047200-133049400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr3:133047200-133049400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr3:133047200-133049600	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr3:133047200-133049600	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr3:133047400-133049200	Enhancers	Fetal Muscle Leg	muscle
11	chr3:133047400-133049400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr3:133047400-133049600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr3:133047600-133049000	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr3:133047600-133049600	Enhancers	Brain Germinal Matrix	brain
15	chr3:133048200-133049600	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr3:133048400-133049200	Enhancers	Brain Cingulate Gyrus	brain
17	chr3:133048400-133049400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr3:133048400-133049600	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr3:133048600-133049000	Weak transcription	Fetal Brain Male	brain
20	chr3:133048600-133049400	Enhancers	Pancreatic Islets	Pancreatic Islet
21	chr3:133048600-133049600	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr3:133048800-133049200	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr3:133048800-133049200	Enhancers	H1 Cell Line	embryonic stem cell

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