Variant report

Variant	rs73209820
Chromosome Location	chr3:133081471-133081472
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11706381	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11707893	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11709476	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11709601	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11714849	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11717365	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11718154	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11720904	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34111099	0.87[EUR][1000 genomes]
rs73207710	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73207711	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73207716	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73207719	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73207744	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73207746	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73207749	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73209818	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73209824	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73209829	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73209837	0.91[EUR][1000 genomes]
rs73209843	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73209853	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73217520	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73217532	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73217540	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73217543	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73217553	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73217560	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73221144	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73221166	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73221167	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73221180	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73221182	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73221187	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73222854	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877503	chr3:133035774-133104631	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133072600-133086800	Weak transcription	Brain Germinal Matrix	brain
2	chr3:133073400-133083000	Weak transcription	Fetal Brain Female	brain
3	chr3:133075000-133085600	Weak transcription	Fetal Brain Male	brain
4	chr3:133080800-133098600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr3:133081000-133081800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr3:133081200-133081800	Enhancers	H9 Cell Line	embryonic stem cell
7	chr3:133081400-133081600	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr3:133081400-133081800	Enhancers	H1 Cell Line	embryonic stem cell
9	chr3:133081400-133081800	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr3:133081400-133081800	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr3:133081400-133081800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
12	chr3:133081400-133082000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr3:133081400-133085800	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr3:133081400-133086400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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