Variant report

Variant	rs73209824
Chromosome Location	chr3:133085654-133085655
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:133078955..133081421-chr3:133083394..133085930,2	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11706381	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11707893	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11709476	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11709601	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11714849	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11717365	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11718154	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11720904	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34111099	0.87[EUR][1000 genomes]
rs73207710	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73207711	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73207716	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73207719	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73207744	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73207746	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73207749	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73209818	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73209820	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73209829	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73209837	0.91[EUR][1000 genomes]
rs73209843	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73209853	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73217520	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73217532	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73217540	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73217543	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73217553	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73217560	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73221144	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73221166	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73221167	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73221180	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73221182	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73221187	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73222854	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877503	chr3:133035774-133104631	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133072600-133086800	Weak transcription	Brain Germinal Matrix	brain
2	chr3:133080800-133098600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr3:133081400-133085800	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr3:133081400-133086400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr3:133081800-133085800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr3:133081800-133090000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr3:133083200-133099200	Weak transcription	Lung	lung
8	chr3:133084200-133086200	Weak transcription	Fetal Brain Female	brain
9	chr3:133085600-133088200	Enhancers	Fetal Brain Male	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links